Wall clock time and date at job start Sun Mar 29 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 S 1.81398 * 109.47215 * 270.27410 * 7 6 5 9 9 C 1.81405 * 103.00229 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47065 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00060 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99778 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00075 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00028 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47112 * 89.99897 * 14 12 10 16 16 H 1.48501 * 109.47122 * 209.99737 * 14 12 10 17 17 H 1.48497 * 109.47118 * 329.99906 * 14 12 10 18 18 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 19 19 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 20 20 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 21 21 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 22 22 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 23 23 H 1.08994 * 109.47481 * 30.27445 * 7 6 5 24 24 H 1.09006 * 109.46847 * 150.28064 * 7 6 5 25 25 H 1.09003 * 109.46813 * 300.00105 * 9 8 7 26 26 H 1.09000 * 109.47135 * 59.99507 * 9 8 7 27 27 H 0.96995 * 120.00330 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 16 1.6161 -3.0963 -1.7093 9 6 1.0598 -4.8108 -1.5046 10 6 0.8576 -5.4385 -2.8597 11 1 1.0454 -4.8637 -3.7545 12 6 0.4328 -6.7466 -2.9570 13 7 0.2046 -7.4467 -1.8673 14 14 0.1829 -7.5249 -4.6366 15 1 1.4482 -8.1637 -5.0795 16 1 -0.8868 -8.5515 -4.5522 17 1 -0.2116 -6.4782 -5.6134 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 1.9613 2.1345 -0.0004 22 1 4.4369 1.2611 0.0003 23 1 2.5363 -3.1404 0.5150 24 1 0.8430 -2.5918 0.5143 25 1 1.8126 -5.3736 -0.9526 26 1 0.1195 -4.8244 -0.9535 27 1 -0.0938 -8.3671 -1.9358 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593422234.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:47 Heat of formation + Delta-G solvation = 32.425752 kcal Electronic energy + Delta-G solvation = -11388.330779 eV Core-core repulsion = 9272.510622 eV Total energy + Delta-G solvation = -2115.820158 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.02249 -35.29736 -34.94827 -32.84506 -30.68488 -28.38973 -27.49192 -25.17119 -22.31955 -20.98638 -18.70851 -18.00072 -17.30201 -16.82288 -16.08315 -15.74198 -15.03853 -14.61409 -14.55467 -14.36637 -13.99052 -13.74985 -13.60948 -13.37248 -12.74022 -12.57847 -12.13254 -11.61313 -10.97789 -10.79138 -10.74689 -10.57859 -9.29921 -8.53366 -8.33469 -6.46742 0.45761 1.38587 1.41472 1.42838 1.54324 1.88076 1.95417 2.29634 2.37583 3.01118 3.32221 3.76670 3.94909 4.18507 4.32804 4.44950 4.58309 4.70390 4.77404 4.93357 4.94906 5.33548 5.56547 5.83408 5.87821 6.17311 6.60023 7.12941 7.21167 8.78292 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.067259 B = 0.006162 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.204065 B = 4542.931212 C = 4594.132197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.450 5.450 3 C -0.036 4.036 4 C -0.058 4.058 5 N -0.520 5.520 6 C 0.199 3.801 7 C 0.004 3.996 8 S -0.294 6.294 9 C 0.093 3.907 10 C -0.537 4.537 11 H 0.060 0.940 12 C 0.017 3.983 13 N -0.923 5.923 14 Si 0.976 3.024 15 H -0.271 1.271 16 H -0.273 1.273 17 H -0.266 1.266 18 H 0.082 0.918 19 H 0.087 0.913 20 H 0.122 0.878 21 H 0.220 0.780 22 H 0.192 0.808 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.015 0.985 26 H 0.024 0.976 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 15.558 4.767 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.132 5.132 3 C -0.171 4.171 4 C -0.207 4.207 5 N -0.241 5.241 6 C -0.063 4.063 7 C -0.145 4.145 8 S -0.068 6.068 9 C -0.055 4.055 10 C -0.576 4.576 11 H 0.078 0.922 12 C -0.184 4.184 13 N -0.562 5.562 14 Si 0.799 3.201 15 H -0.196 1.196 16 H -0.198 1.198 17 H -0.190 1.190 18 H 0.100 0.900 19 H 0.106 0.894 20 H 0.141 0.859 21 H 0.237 0.763 22 H 0.209 0.791 23 H 0.115 0.885 24 H 0.126 0.874 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.870 15.419 3.922 15.934 hybrid contribution -0.868 -0.888 0.492 1.336 sum -1.738 14.531 4.414 15.285 Atomic orbital electron populations 1.22378 0.74341 1.06275 1.04832 1.45495 1.09107 1.05905 1.52732 1.23395 0.90475 0.93732 1.09511 1.22850 0.98509 0.90215 1.09078 1.70156 1.19462 1.14211 1.20223 1.22049 0.86320 0.89798 1.08089 1.21366 1.04782 0.90905 0.97413 1.86779 1.89616 1.18944 1.11482 1.20794 0.97183 0.87377 1.00115 1.20953 1.47172 0.97807 0.91655 0.92173 1.25880 0.94098 0.96924 1.01523 1.70045 1.45807 1.10396 1.29957 0.85282 0.78326 0.78120 0.78352 1.19623 1.19829 1.18992 0.89982 0.89395 0.85950 0.76295 0.79133 0.88549 0.87436 0.96650 0.95801 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 10.97 127.77 1.40 2.50 15 2 N -0.45 -11.56 3.15 -537.60 -1.69 -13.25 15 3 C -0.04 -0.79 11.58 83.09 0.96 0.17 15 4 C -0.06 -1.59 11.87 83.52 0.99 -0.59 15 5 N -0.52 -18.88 11.25 -188.13 -2.12 -21.00 15 6 C 0.20 6.76 7.16 138.13 0.99 7.75 15 7 C 0.00 0.16 6.25 71.24 0.45 0.61 15 8 S -0.29 -13.31 21.64 -56.49 -1.22 -14.53 15 9 C 0.09 4.95 5.70 71.23 0.41 5.36 15 10 C -0.54 -30.90 9.13 25.60 0.23 -30.67 15 11 H 0.06 3.47 7.71 -2.91 -0.02 3.45 15 12 C 0.02 0.94 5.46 84.66 0.46 1.41 15 13 N -0.92 -54.04 13.29 21.45 0.28 -53.75 15 14 Si 0.98 43.74 29.54 68.60 2.03 45.77 15 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 18 H 0.08 1.49 8.14 -2.39 -0.02 1.47 15 19 H 0.09 1.54 7.05 -2.39 -0.02 1.53 15 20 H 0.12 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.22 2.49 8.06 -2.91 -0.02 2.46 15 22 H 0.19 3.97 8.06 -2.91 -0.02 3.95 15 23 H 0.10 3.57 8.14 -2.39 -0.02 3.55 15 24 H 0.11 3.33 7.07 -2.39 -0.02 3.31 15 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 15 26 H 0.02 1.30 8.14 -2.39 -0.02 1.28 15 27 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 Total: -1.00 -70.55 255.26 4.32 -66.23 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.15 Total: 4.01 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.89 Total: -13.47 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -3.53 Total: -88.00 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -13.31 SS G_CDS: -1.22 Total: -14.53 kcal Total: -70.55 4.32 -66.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593422234.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.653 kcal (2) G-P(sol) polarization free energy of solvation -70.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds