Wall clock time and date at job start Sun Mar 29 2020 21:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.50697 * 109.47316 * 119.99907 * 2 1 3 5 5 H 1.07998 * 120.00262 * 119.99958 * 4 2 1 6 6 C 1.37879 * 119.99915 * 299.99975 * 4 2 1 7 7 N 1.31518 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00001 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47063 * 89.99925 * 8 6 4 10 10 H 1.48497 * 109.47064 * 209.99655 * 8 6 4 11 11 H 1.48496 * 109.46954 * 329.99963 * 8 6 4 12 12 N 1.46907 * 109.47211 * 239.99634 * 2 1 3 13 13 C 1.46902 * 110.99665 * 84.99857 * 12 2 1 14 14 C 1.53001 * 109.46901 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.53785 * 113.61570 * 274.13981 * 16 15 14 18 18 C 1.53956 * 87.02052 * 220.04627 * 17 16 15 19 19 C 1.53777 * 87.11087 * 25.36196 * 18 17 16 20 20 H 1.09002 * 109.47224 * 300.00388 * 1 2 3 21 21 H 1.09000 * 109.47272 * 60.00043 * 1 2 3 22 22 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99348 * 179.97438 * 7 6 4 24 24 H 1.00895 * 110.99712 * 321.04829 * 12 2 1 25 25 H 1.09001 * 109.46712 * 60.00151 * 13 12 2 26 26 H 1.09002 * 109.47411 * 300.00262 * 13 12 2 27 27 H 1.09001 * 109.46652 * 60.00371 * 14 13 12 28 28 H 1.08992 * 109.47514 * 300.00460 * 14 13 12 29 29 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 30 30 H 1.09001 * 109.47194 * 60.00677 * 15 14 13 31 31 H 1.09001 * 112.85054 * 45.33402 * 16 15 14 32 32 H 1.09000 * 113.61195 * 334.56762 * 17 16 15 33 33 H 1.09001 * 113.61520 * 105.46896 * 17 16 15 34 34 H 1.09005 * 113.53676 * 270.80967 * 18 17 16 35 35 H 1.08993 * 113.66514 * 139.93360 * 18 17 16 36 36 H 1.09011 * 113.61618 * 220.09268 * 19 18 17 37 37 H 1.09000 * 113.69499 * 89.19666 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6259 1.2800 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 6 2.5962 -0.5330 -3.5742 15 6 2.6622 0.4202 -4.7691 16 6 3.1753 -0.3354 -5.9965 17 6 4.7094 -0.3857 -6.0921 18 6 4.5423 -0.1592 -7.6057 19 6 3.1995 0.5147 -7.2778 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.9032 -0.5278 4.4375 24 1 1.4496 -1.4980 -1.4100 25 1 2.7588 1.0461 -2.1182 26 1 1.0870 0.6162 -2.5526 27 1 1.9201 -1.3568 -3.8029 28 1 3.5916 -0.9264 -3.3683 29 1 1.6669 0.8140 -4.9752 30 1 3.3385 1.2437 -4.5401 31 1 2.6978 -1.3067 -6.1259 32 1 5.2060 0.4382 -5.5795 33 1 5.1310 -1.3585 -5.8392 34 1 4.4397 -1.0829 -8.1754 35 1 5.2802 0.5214 -8.0303 36 1 2.4038 0.2677 -7.9807 37 1 3.2810 1.5853 -7.0899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594723449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:12 Heat of formation + Delta-G solvation = 1.731553 kcal Electronic energy + Delta-G solvation = -13857.112045 eV Core-core repulsion = 11634.300116 eV Total energy + Delta-G solvation = -2222.811929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.04946 -36.54630 -33.63419 -31.84752 -29.32237 -26.14571 -25.65308 -24.99375 -22.54742 -20.88948 -20.08143 -19.41854 -16.63290 -15.78891 -15.12199 -14.96477 -14.85813 -13.95396 -13.58388 -13.06405 -12.70217 -12.55263 -12.52067 -12.18154 -11.80778 -11.60409 -11.38705 -11.07700 -10.93592 -10.64699 -10.49563 -10.46456 -10.11652 -10.08467 -9.92877 -9.42339 -9.09874 -8.53161 -7.35254 -6.01066 -3.97973 3.27754 3.37855 3.40525 4.43556 4.47862 4.55702 4.63263 4.75442 5.07190 5.27501 5.29509 5.36199 5.55827 5.57672 5.64611 5.71088 5.79986 5.86087 5.90314 5.97104 6.04158 6.12991 6.24559 6.25257 6.31243 6.43834 6.53551 6.57617 6.60330 6.81599 7.16285 7.76184 7.98146 8.40431 8.74823 9.10512 9.62008 11.12644 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067491 B = 0.004997 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.767884 B = 5602.572870 C = 5780.189965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.181 3.819 3 H 0.032 0.968 4 C -0.497 4.497 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.902 5.902 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.674 5.674 13 C 0.057 3.943 14 C -0.114 4.114 15 C -0.108 4.108 16 C -0.109 4.109 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.140 4.140 20 H 0.044 0.956 21 H 0.025 0.975 22 H 0.053 0.947 23 H 0.263 0.737 24 H 0.329 0.671 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 2.921 -19.439 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.072 3.928 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.541 5.541 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.303 5.303 13 C -0.073 4.073 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.127 4.127 17 C -0.175 4.175 18 C -0.182 4.182 19 C -0.177 4.177 20 H 0.063 0.937 21 H 0.044 0.956 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.146 0.854 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.268 3.008 -19.067 19.345 hybrid contribution -1.686 0.934 0.074 1.929 sum -0.418 3.942 -18.993 19.402 Atomic orbital electron populations 1.22846 1.01601 1.00822 0.98772 1.19647 0.88500 0.95094 0.89560 0.94971 1.21016 1.31044 1.13695 0.87809 0.90078 1.24952 0.96034 0.96633 0.95886 1.69892 1.46063 1.40385 0.97802 0.86880 0.80556 0.83988 0.76806 1.20814 1.22436 1.19546 1.60610 1.57822 1.08900 1.02972 1.21972 0.98173 0.96142 0.91039 1.21546 1.02103 0.97962 0.93586 1.21542 1.00889 0.98224 0.93954 1.22549 0.96239 0.99304 0.94600 1.23004 0.96402 1.02143 0.95908 1.22845 0.97768 1.00652 0.96934 1.22952 0.97487 0.99598 0.97676 0.93729 0.95560 0.92766 0.92744 0.85385 0.91852 0.96669 0.92618 0.91191 0.92307 0.91954 0.89476 0.90083 0.91582 0.90496 0.91800 0.91906 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.64 37.16 0.32 -3.69 16 2 C 0.18 4.39 2.17 -68.86 -0.15 4.25 16 3 H 0.03 0.82 6.86 -51.93 -0.36 0.46 16 4 C -0.50 -14.37 9.42 -34.44 -0.32 -14.70 16 5 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 8 Si 0.89 22.35 24.37 -169.99 -4.14 18.21 16 9 H -0.28 -6.89 6.87 56.52 0.39 -6.50 16 10 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.56 6.53 56.52 0.37 -6.19 16 12 N -0.67 -14.10 6.23 -107.95 -0.67 -14.77 16 13 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 14 C -0.11 -1.58 5.47 -26.73 -0.15 -1.72 16 15 C -0.11 -1.24 5.04 -26.73 -0.13 -1.38 16 16 C -0.11 -1.10 3.64 -89.81 -0.33 -1.42 16 17 C -0.14 -1.34 7.65 -25.82 -0.20 -1.53 16 18 C -0.14 -1.23 8.09 -25.83 -0.21 -1.44 16 19 C -0.14 -1.24 7.65 -25.92 -0.20 -1.44 16 20 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 21 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 22 H 0.05 1.16 8.13 -51.93 -0.42 0.73 16 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.33 6.47 8.47 -39.29 -0.33 6.14 16 25 H 0.06 1.12 8.06 -51.93 -0.42 0.71 16 26 H 0.02 0.25 7.44 -51.93 -0.39 -0.13 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 288.82 15.07 4.35 4.35 Total: -1.00 -30.18 288.82 -7.87 -38.06 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.70 Total: 1.79 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -1.48 Total: -20.29 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.10 Total: -42.12 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.18 -7.87 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594723449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.788 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds