Wall clock time and date at job start Sun Mar 29 2020 21:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47233 * 60.00118 * 8 6 4 10 10 H 1.48506 * 109.46832 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47248 * 299.99578 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.53785 * 113.61570 * 274.13879 * 16 15 14 18 18 C 1.53956 * 87.02052 * 220.04627 * 17 16 15 19 19 C 1.53785 * 113.61684 * 176.52921 * 16 15 14 20 20 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 21 21 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 22 22 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 23 23 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 24 24 H 1.00902 * 111.00190 * 151.03855 * 12 2 1 25 25 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 26 26 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 27 27 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 28 28 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 29 29 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 30 30 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 31 31 H 1.09001 * 112.85054 * 45.33300 * 16 15 14 32 32 H 1.08997 * 113.61431 * 334.56278 * 17 16 15 33 33 H 1.09001 * 113.61520 * 105.46896 * 17 16 15 34 34 H 1.08996 * 113.53859 * 270.80812 * 18 17 16 35 35 H 1.09006 * 113.66725 * 139.93197 * 18 17 16 36 36 H 1.08998 * 113.61633 * 254.53160 * 19 16 15 37 37 H 1.08997 * 113.60945 * 25.35064 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 6 2.6610 0.4201 4.7694 16 6 3.1730 -0.3358 5.9971 17 6 2.0662 -1.0631 6.7787 18 6 2.7853 -0.6093 8.0621 19 6 3.3573 0.5555 7.2368 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7081 1.1608 -3.4844 24 1 2.9173 -1.1206 1.0287 25 1 2.7588 1.0462 2.1182 26 1 1.0870 0.6163 2.5526 27 1 1.9183 -1.3565 3.8030 28 1 3.5903 -0.9272 3.3692 29 1 3.3380 1.2432 4.5406 30 1 1.6659 0.8145 4.9750 31 1 4.0371 -0.9631 5.7781 32 1 1.0785 -0.6198 6.6516 33 1 2.0679 -2.1436 6.6349 34 1 3.5428 -1.3124 8.4084 35 1 2.1075 -0.2916 8.8544 36 1 4.3998 0.7798 7.4622 37 1 2.7243 1.4428 7.2344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594723450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:14 Heat of formation + Delta-G solvation = -8.339730 kcal Electronic energy + Delta-G solvation = -13798.137612 eV Core-core repulsion = 11574.888960 eV Total energy + Delta-G solvation = -2223.248652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99967 -36.18023 -33.56679 -31.66841 -28.63291 -26.01620 -25.61722 -25.03045 -22.46334 -20.73303 -19.70709 -19.34094 -16.41479 -15.71779 -15.13462 -14.82786 -14.64828 -13.61536 -13.53681 -13.11864 -12.51015 -12.48273 -12.26148 -11.80170 -11.39915 -11.25139 -10.99687 -10.89602 -10.68091 -10.61470 -10.44772 -10.25254 -10.19002 -10.08571 -9.98493 -9.59240 -8.78370 -8.44057 -7.19295 -5.99548 -4.06011 3.32892 3.37040 3.40003 4.42045 4.54014 4.60015 4.67930 4.79689 5.22699 5.31846 5.36555 5.47073 5.60492 5.66330 5.68488 5.77226 5.85188 5.97210 6.00292 6.06364 6.16800 6.28621 6.32921 6.49469 6.66887 6.71726 6.94012 7.18740 7.28806 7.56322 7.81373 7.94782 8.31766 8.45549 8.73891 9.05437 9.59750 11.06817 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.075361 B = 0.004634 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.455434 B = 6041.003323 C = 6159.810248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.691 5.691 13 C 0.060 3.940 14 C -0.113 4.113 15 C -0.108 4.108 16 C -0.108 4.108 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.140 4.140 20 H 0.003 0.997 21 H 0.080 0.920 22 H 0.031 0.969 23 H 0.261 0.739 24 H 0.329 0.671 25 H 0.015 0.985 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -0.966 16.228 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.322 5.322 13 C -0.070 4.070 14 C -0.151 4.151 15 C -0.146 4.146 16 C -0.127 4.127 17 C -0.174 4.174 18 C -0.182 4.182 19 C -0.177 4.177 20 H 0.022 0.978 21 H 0.098 0.902 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.145 0.855 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.749 -1.084 16.237 16.504 hybrid contribution 1.048 0.142 -1.125 1.544 sum 3.797 -0.942 15.112 15.611 Atomic orbital electron populations 1.21703 0.97957 0.99260 0.99256 1.19100 0.92616 0.92302 0.85760 0.98292 1.21252 1.31443 1.12472 0.90545 0.92299 1.24931 0.95076 0.95011 0.99037 1.69894 1.36636 1.22938 1.23511 0.86578 0.79052 0.79793 0.82067 1.20189 1.21302 1.20340 1.60720 1.31925 1.33342 1.06172 1.21910 0.99460 0.94139 0.91493 1.21552 1.01010 0.98570 0.94000 1.21542 1.00870 0.98127 0.94074 1.22551 0.98699 0.97650 0.93770 1.23000 0.98254 1.00396 0.95791 1.22848 1.00031 0.98489 0.96835 1.22953 1.00896 0.97301 0.96567 0.97778 0.90173 0.95028 0.92904 0.85469 0.96671 0.92145 0.91550 0.92699 0.92220 0.92040 0.89502 0.90121 0.91669 0.90523 0.91827 0.91892 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 9.19 37.15 0.34 -2.85 16 2 C 0.21 5.53 2.60 -68.87 -0.18 5.35 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.62 8.59 -34.44 -0.30 -14.91 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.97 11.32 55.43 0.63 -25.34 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.69 -15.41 6.30 -107.96 -0.68 -16.09 16 13 C 0.06 1.13 5.48 -3.83 -0.02 1.10 16 14 C -0.11 -1.69 5.47 -26.74 -0.15 -1.83 16 15 C -0.11 -1.34 5.04 -26.74 -0.13 -1.48 16 16 C -0.11 -1.16 3.64 -89.80 -0.33 -1.49 16 17 C -0.14 -1.38 7.65 -25.82 -0.20 -1.58 16 18 C -0.14 -1.28 8.09 -25.82 -0.21 -1.49 16 19 C -0.14 -1.32 7.65 -25.91 -0.20 -1.52 16 20 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 21 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.33 7.12 8.22 -39.29 -0.32 6.80 16 25 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 26 H 0.06 1.16 7.44 -51.93 -0.39 0.78 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.76 7.87 -51.93 -0.41 0.35 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -28.70 295.30 -8.90 -37.60 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.81 Total: 1.90 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.46 Total: -19.06 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.05 Total: -41.44 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.70 -8.90 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594723450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.261 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds