Wall clock time and date at job start Sun Mar 29 2020 21:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47233 * 60.00118 * 8 6 4 10 10 H 1.48506 * 109.46832 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47248 * 299.99578 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.53785 * 113.61570 * 274.13879 * 16 15 14 18 18 C 1.53956 * 87.02052 * 220.04627 * 17 16 15 19 19 C 1.53785 * 113.61684 * 176.52921 * 16 15 14 20 20 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 21 21 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 22 22 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 23 23 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 24 24 H 1.00902 * 111.00190 * 151.03855 * 12 2 1 25 25 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 26 26 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 27 27 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 28 28 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 29 29 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 30 30 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 31 31 H 1.09001 * 112.85054 * 45.33300 * 16 15 14 32 32 H 1.08997 * 113.61431 * 334.56278 * 17 16 15 33 33 H 1.09001 * 113.61520 * 105.46896 * 17 16 15 34 34 H 1.08996 * 113.53859 * 270.80812 * 18 17 16 35 35 H 1.09006 * 113.66725 * 139.93197 * 18 17 16 36 36 H 1.08998 * 113.61633 * 254.53160 * 19 16 15 37 37 H 1.08997 * 113.60945 * 25.35064 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 6 2.6610 0.4201 4.7694 16 6 3.1730 -0.3358 5.9971 17 6 2.0662 -1.0631 6.7787 18 6 2.7853 -0.6093 8.0621 19 6 3.3573 0.5555 7.2368 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7081 1.1608 -3.4844 24 1 2.9173 -1.1206 1.0287 25 1 2.7588 1.0462 2.1182 26 1 1.0870 0.6163 2.5526 27 1 1.9183 -1.3565 3.8030 28 1 3.5903 -0.9272 3.3692 29 1 3.3380 1.2432 4.5406 30 1 1.6659 0.8145 4.9750 31 1 4.0371 -0.9631 5.7781 32 1 1.0785 -0.6198 6.6516 33 1 2.0679 -2.1436 6.6349 34 1 3.5428 -1.3124 8.4084 35 1 2.1075 -0.2916 8.8544 36 1 4.3998 0.7798 7.4622 37 1 2.7243 1.4428 7.2344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594723450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:14 Heat of formation + Delta-G solvation = -24.567016 kcal Electronic energy + Delta-G solvation = -13798.841280 eV Core-core repulsion = 11574.888960 eV Total energy + Delta-G solvation = -2223.952320 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83026 -37.95114 -35.27528 -33.39397 -30.36384 -27.59125 -26.95633 -26.38442 -23.67986 -21.98645 -21.67529 -20.16713 -18.49848 -16.96040 -16.64500 -16.19031 -15.87641 -15.29330 -15.00837 -14.72200 -13.83399 -13.67839 -13.47343 -13.25897 -12.88949 -12.76936 -12.66519 -12.56657 -12.21864 -12.12304 -12.04151 -11.90583 -11.54104 -11.33588 -10.96228 -10.92622 -10.72577 -10.57760 -9.06536 -8.14133 -6.29179 1.42183 1.44703 1.52349 2.41237 3.13952 3.52778 3.79877 3.85712 3.91697 4.05621 4.19443 4.33854 4.55511 4.69161 4.79143 4.82301 4.83130 4.93635 4.95891 4.98303 5.05724 5.07515 5.13409 5.16226 5.21156 5.36206 5.40285 5.48247 5.53876 5.66665 5.70662 5.84771 6.20551 6.47050 6.77283 6.99850 7.41450 8.91609 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.075361 B = 0.004634 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.455434 B = 6041.003323 C = 6159.810248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.212 3.788 3 H -0.033 1.033 4 C -0.541 4.541 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.689 5.689 13 C 0.061 3.939 14 C -0.101 4.101 15 C -0.102 4.102 16 C -0.111 4.111 17 C -0.141 4.141 18 C -0.138 4.138 19 C -0.138 4.138 20 H 0.020 0.980 21 H 0.057 0.943 22 H 0.028 0.972 23 H 0.263 0.737 24 H 0.332 0.668 25 H 0.009 0.991 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.162 -1.712 17.011 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 H -0.016 1.016 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.320 5.320 13 C -0.069 4.069 14 C -0.138 4.138 15 C -0.140 4.140 16 C -0.130 4.130 17 C -0.179 4.179 18 C -0.176 4.176 19 C -0.175 4.175 20 H 0.039 0.961 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.449 -1.835 17.045 17.487 hybrid contribution 0.820 0.405 -1.335 1.618 sum 4.269 -1.430 15.709 16.342 Atomic orbital electron populations 1.21533 0.97747 0.98825 0.98960 1.18945 0.92822 0.90724 0.87199 1.01590 1.21583 1.31916 1.12810 0.91654 0.92167 1.25787 0.95106 0.95679 1.02177 1.70026 1.37383 1.24118 1.24305 0.85495 0.78759 0.78634 0.78036 1.19553 1.20826 1.19457 1.60660 1.32165 1.33603 1.05562 1.21990 0.99222 0.93945 0.91726 1.21438 1.00871 0.98501 0.93036 1.21486 1.01062 0.97705 0.93770 1.22558 0.98981 0.98064 0.93354 1.23029 0.98004 1.00295 0.96555 1.22837 1.00087 0.98181 0.96452 1.22951 1.01489 0.97355 0.95695 0.96105 0.92401 0.95324 0.92771 0.85102 0.97326 0.92792 0.91746 0.92174 0.92221 0.92068 0.89358 0.90454 0.91725 0.89693 0.90994 0.91156 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.86 9.19 71.98 0.66 -5.20 16 2 C 0.21 11.31 2.60 44.16 0.11 11.42 16 3 H -0.03 -1.97 7.80 -2.39 -0.02 -1.99 16 4 C -0.54 -30.63 8.59 25.60 0.22 -30.41 16 5 H 0.06 3.31 7.62 -2.91 -0.02 3.29 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.06 11.32 21.45 0.24 -53.82 16 8 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 N -0.69 -30.69 6.30 -495.47 -3.12 -33.81 16 13 C 0.06 2.26 5.48 86.30 0.47 2.74 16 14 C -0.10 -2.88 5.47 30.59 0.17 -2.71 16 15 C -0.10 -2.40 5.04 30.59 0.15 -2.24 16 16 C -0.11 -2.18 3.64 -10.27 -0.04 -2.22 16 17 C -0.14 -2.60 7.65 31.18 0.24 -2.37 16 18 C -0.14 -2.13 8.09 31.18 0.25 -1.88 16 19 C -0.14 -2.30 7.65 31.12 0.24 -2.06 16 20 H 0.02 0.96 7.45 -2.39 -0.02 0.94 16 21 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 22 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 24 H 0.33 14.30 8.22 -89.69 -0.74 13.57 16 25 H 0.01 0.33 8.06 -2.39 -0.02 0.31 16 26 H 0.05 2.06 7.44 -2.39 -0.02 2.05 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.44 7.87 -2.39 -0.02 1.42 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.47 7.92 -2.39 -0.02 1.45 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -60.22 295.30 2.35 -57.87 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.27 Total: 17.57 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 2.93 Total: -33.82 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -2.88 Total: -87.63 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -60.22 2.35 -57.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594723450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.305 kcal (2) G-P(sol) polarization free energy of solvation -60.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds