Wall clock time and date at job start Sun Mar 29 2020 21:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00307 * 2 1 4 4 H 1.48492 * 109.47549 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46904 * 300.00182 * 3 2 1 6 6 H 1.48508 * 109.46775 * 59.99588 * 3 2 1 7 7 C 1.37877 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99863 * 182.28476 * 7 2 1 9 9 C 1.50700 * 120.00220 * 2.27284 * 7 2 1 10 10 C 1.52999 * 115.56084 * 80.68110 * 9 7 2 11 11 S 1.81402 * 109.47045 * 39.69849 * 10 9 7 12 12 C 1.81397 * 103.00096 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47219 * 180.02562 * 12 11 10 14 14 C 1.53009 * 117.49579 * 243.74288 * 13 12 11 15 15 C 1.52999 * 117.49838 * 175.08654 * 13 12 11 16 16 C 1.53004 * 117.49959 * 294.99232 * 9 7 2 17 17 C 1.52999 * 60.03001 * 252.49949 * 16 9 7 18 18 H 0.96999 * 120.00075 * 354.99905 * 1 2 3 19 19 H 1.08997 * 109.47424 * 159.69918 * 10 9 7 20 20 H 1.08999 * 109.46984 * 279.70391 * 10 9 7 21 21 H 1.09007 * 109.47122 * 300.00089 * 12 11 10 22 22 H 1.08997 * 109.47363 * 59.99825 * 12 11 10 23 23 H 1.09000 * 115.55328 * 29.41531 * 13 12 11 24 24 H 1.08994 * 117.49615 * 0.02562 * 14 13 12 25 25 H 1.09002 * 117.49293 * 145.02106 * 14 13 12 26 26 H 1.09003 * 117.49919 * 214.97529 * 15 13 12 27 27 H 1.09000 * 117.50398 * 359.97438 * 15 13 12 28 28 H 1.08996 * 117.49944 * 359.97438 * 16 9 7 29 29 H 1.09001 * 117.49492 * 144.99788 * 16 9 7 30 30 H 1.09000 * 117.50511 * 107.50485 * 17 16 9 31 31 H 1.09005 * 117.49542 * 252.52168 * 17 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0839 -1.1945 0.0368 9 6 1.2519 -2.4986 -0.0529 10 6 0.7755 -2.9307 -1.4411 11 16 2.0590 -2.5521 -2.6658 12 6 1.3216 -3.1260 -4.2206 13 6 2.2974 -2.8736 -5.3716 14 6 1.8638 -1.8929 -6.4632 15 6 1.9068 -3.3948 -6.7560 16 6 0.3604 -2.8483 1.1405 17 6 1.6757 -3.5991 0.9230 18 1 -0.4850 0.8368 0.0732 19 1 0.5789 -4.0028 -1.4405 20 1 -0.1385 -2.3938 -1.6950 21 1 1.1110 -4.1933 -4.1507 22 1 0.3940 -2.5840 -4.4047 23 1 3.3542 -2.8953 -5.1054 24 1 0.8836 -1.4274 -6.3609 25 1 2.6354 -1.2698 -6.9152 26 1 2.7067 -3.7590 -7.4008 27 1 0.9549 -3.9179 -6.8468 28 1 0.3186 -2.1351 1.9636 29 1 -0.5656 -3.3859 0.9364 30 1 2.4989 -3.3797 1.6029 31 1 1.6149 -4.6305 0.5756 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594897832.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:19 Heat of formation + Delta-G solvation = 23.114910 kcal Electronic energy + Delta-G solvation = -11880.692870 eV Core-core repulsion = 9868.009307 eV Total energy + Delta-G solvation = -2012.683563 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.42608 -38.26160 -33.97289 -29.88382 -29.20635 -27.30692 -23.23846 -22.91626 -21.81378 -20.94046 -18.19805 -17.24503 -16.60994 -16.03815 -15.55342 -15.27703 -15.03251 -14.98743 -13.94674 -13.79543 -13.20969 -12.88584 -12.83791 -12.56835 -12.36751 -12.33937 -12.00207 -11.50559 -11.28081 -11.02003 -10.78366 -10.53006 -10.41764 -9.84918 -8.29430 -8.07051 -6.15994 0.98970 1.39290 1.43443 1.53160 2.07810 2.45642 2.91057 3.23440 3.47868 3.74243 3.96511 4.10260 4.22249 4.38483 4.41967 4.60331 4.63604 4.65039 4.68275 4.78312 4.96147 5.01369 5.01838 5.22721 5.25287 5.27408 5.54357 5.63755 5.80508 6.39764 6.85189 7.50501 9.00739 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.027771 B = 0.009870 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.018521 B = 2836.082357 C = 3519.597653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.035 3.965 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.487 4.487 8 H 0.046 0.954 9 C 0.023 3.977 10 C -0.020 4.020 11 S -0.261 6.261 12 C -0.063 4.063 13 C -0.153 4.153 14 C -0.181 4.181 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.185 4.185 18 H 0.258 0.742 19 H 0.067 0.933 20 H 0.050 0.950 21 H 0.084 0.916 22 H 0.068 0.932 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.574 -6.196 -9.574 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.022 3.978 10 C -0.168 4.168 11 S -0.032 6.032 12 C -0.211 4.211 13 C -0.172 4.172 14 C -0.218 4.218 15 C -0.189 4.189 16 C -0.193 4.193 17 C -0.222 4.222 18 H 0.067 0.933 19 H 0.086 0.914 20 H 0.069 0.931 21 H 0.103 0.897 22 H 0.086 0.914 23 H 0.121 0.879 24 H 0.109 0.891 25 H 0.122 0.878 26 H 0.132 0.868 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.408 -5.609 -9.489 11.283 hybrid contribution -1.049 0.586 0.221 1.222 sum 1.358 -5.023 -9.268 10.629 Atomic orbital electron populations 1.70070 1.06814 1.27015 1.50489 1.25477 0.95428 1.01334 0.94283 0.85776 0.79354 0.80790 0.77435 1.19549 1.20863 1.20595 1.20474 0.91887 0.89869 1.50326 0.93616 1.18637 0.99372 0.93729 0.86068 1.22759 0.97151 1.00047 0.96852 1.87155 1.29915 1.83772 1.02363 1.22942 1.00305 1.03142 0.94742 1.21795 0.98927 1.07488 0.88958 1.23128 1.03097 0.93352 1.02183 1.23119 1.03933 0.95941 0.95936 1.22490 0.92915 1.02003 1.01923 1.23070 0.98032 0.96301 1.04787 0.93276 0.91408 0.93082 0.89730 0.91371 0.87921 0.89140 0.87819 0.86790 0.87879 0.91944 0.90556 0.90418 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.85 12.91 21.45 0.28 -51.58 16 2 C 0.04 1.95 5.44 84.65 0.46 2.41 16 3 Si 0.94 44.74 29.54 68.60 2.03 46.76 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.49 -26.89 7.52 25.60 0.19 -26.70 16 8 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 9 C 0.02 1.14 1.64 -52.90 -0.09 1.06 16 10 C -0.02 -0.88 6.05 71.98 0.44 -0.44 16 11 S -0.26 -11.11 20.53 -56.49 -1.16 -12.27 16 12 C -0.06 -2.03 6.22 71.98 0.45 -1.58 16 13 C -0.15 -4.15 5.75 -10.79 -0.06 -4.22 16 14 C -0.18 -4.26 10.18 30.62 0.31 -3.95 16 15 C -0.15 -3.00 10.25 30.62 0.31 -2.69 16 16 C -0.15 -7.15 9.49 30.60 0.29 -6.86 16 17 C -0.18 -7.90 9.88 30.62 0.30 -7.59 16 18 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 19 H 0.07 2.68 7.95 -2.39 -0.02 2.66 16 20 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 21 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 22 H 0.07 2.22 7.88 -2.39 -0.02 2.20 16 23 H 0.10 2.96 8.06 -2.39 -0.02 2.94 16 24 H 0.09 2.20 8.03 -2.39 -0.02 2.18 16 25 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 28 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.09 3.44 8.08 -2.38 -0.02 3.42 16 Total: -1.00 -59.62 277.99 4.83 -54.79 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.08 Total: 12.85 kcal Atomic # 6 Polarization: -53.17 SS G_CDS: 2.61 Total: -50.57 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.28 Total: -51.58 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -11.11 SS G_CDS: -1.16 Total: -12.27 kcal Total: -59.62 4.83 -54.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594897832.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.909 kcal (2) G-P(sol) polarization free energy of solvation -59.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds