Wall clock time and date at job start Sun Mar 29 2020 21:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99997 * 2 1 4 4 H 1.48500 * 109.47481 * 239.99732 * 3 2 1 5 5 H 1.48499 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46939 * 119.99986 * 3 2 1 7 7 C 1.37879 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99934 * 173.92043 * 7 2 1 9 9 C 1.50703 * 120.00129 * 353.91620 * 7 2 1 10 10 C 1.53005 * 115.54404 * 84.88830 * 9 7 2 11 11 S 1.81399 * 109.47180 * 39.93749 * 10 9 7 12 12 C 1.81409 * 102.99701 * 179.97438 * 11 10 9 13 13 C 1.53774 * 113.61412 * 272.49638 * 12 11 10 14 14 C 1.53785 * 87.08120 * 220.02272 * 13 12 11 15 15 C 1.53781 * 87.08019 * 25.43349 * 14 13 12 16 16 C 1.52997 * 117.51917 * 230.58946 * 9 7 2 17 17 C 1.52997 * 117.49866 * 299.22273 * 9 7 2 18 18 H 0.97003 * 120.00601 * 354.96419 * 1 2 3 19 19 H 1.08993 * 109.47473 * 279.93458 * 10 9 7 20 20 H 1.08999 * 109.46395 * 159.93427 * 10 9 7 21 21 H 1.09000 * 112.84820 * 43.80603 * 12 11 10 22 22 H 1.09000 * 113.61751 * 334.56539 * 13 12 11 23 23 H 1.09002 * 113.61477 * 105.47074 * 13 12 11 24 24 H 1.09000 * 113.60886 * 270.88684 * 14 13 12 25 25 H 1.08999 * 113.61753 * 139.98163 * 14 13 12 26 26 H 1.09004 * 113.61482 * 220.02314 * 15 14 13 27 27 H 1.08999 * 113.69247 * 89.13259 * 15 14 13 28 28 H 1.09001 * 117.49604 * 214.97053 * 16 9 7 29 29 H 1.08990 * 117.49795 * 359.97438 * 16 9 7 30 30 H 1.09001 * 117.49774 * 359.97139 * 17 9 7 31 31 H 1.09000 * 117.49791 * 144.97446 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0799 -1.1967 -0.0996 9 6 1.2573 -2.4956 0.1372 10 6 0.6978 -3.0760 -1.1632 11 16 1.9034 -2.8413 -2.4981 12 6 1.0739 -3.5812 -3.9318 13 6 1.3253 -5.0913 -4.0773 14 6 1.4365 -4.8471 -5.5915 15 6 1.8472 -3.4053 -5.2494 16 6 1.7470 -3.4829 1.1984 17 6 0.4436 -2.7113 1.4148 18 1 -0.4851 0.8368 0.0737 19 1 -0.2310 -2.5661 -1.4187 20 1 0.5037 -4.1405 -1.0320 21 1 0.0223 -3.3034 -4.0023 22 1 2.2564 -5.4251 -3.6194 23 1 0.4699 -5.7054 -3.7956 24 1 0.4835 -4.9169 -6.1161 25 1 2.2275 -5.4246 -6.0700 26 1 1.4132 -2.6582 -5.9139 27 1 2.9208 -3.2766 -5.1118 28 1 1.6705 -4.5460 0.9702 29 1 2.6100 -3.1914 1.7969 30 1 0.4491 -1.9120 2.1559 31 1 -0.4905 -3.2664 1.3288 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594900039.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:27 Heat of formation + Delta-G solvation = 33.450480 kcal Electronic energy + Delta-G solvation = -12067.936481 eV Core-core repulsion = 10055.701102 eV Total energy + Delta-G solvation = -2012.235379 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.02715 -36.51932 -31.88388 -27.64307 -25.65220 -25.40171 -24.97694 -21.09553 -19.59903 -18.93484 -16.37081 -15.89902 -15.11725 -14.54935 -13.91056 -13.59491 -13.15618 -12.63410 -12.29074 -12.24684 -11.99261 -11.62100 -10.95406 -10.82515 -10.56650 -10.47330 -10.32142 -10.23248 -10.08211 -9.56412 -8.95291 -8.71765 -8.38002 -7.97509 -6.56491 -5.98772 -4.02627 2.68016 3.37224 3.40506 3.44730 3.70858 4.47670 4.81640 4.83007 5.03743 5.12565 5.30722 5.36005 5.78234 5.80661 5.96907 6.01778 6.04885 6.10493 6.23350 6.33823 6.48016 6.54295 6.59906 6.75148 6.87555 7.07985 7.40377 7.50596 7.93403 8.43590 8.96495 9.62158 11.10459 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.032721 B = 0.009950 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.503250 B = 2813.534262 C = 3356.041313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.482 4.482 8 H 0.061 0.939 9 C 0.056 3.944 10 C -0.030 4.030 11 S -0.211 6.211 12 C -0.108 4.108 13 C -0.129 4.129 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.208 4.208 17 C -0.153 4.153 18 H 0.259 0.741 19 H 0.074 0.926 20 H 0.044 0.956 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 -7.347 -6.796 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.055 3.945 10 C -0.178 4.178 11 S 0.021 5.979 12 C -0.237 4.237 13 C -0.169 4.169 14 C -0.179 4.179 15 C -0.148 4.148 16 C -0.245 4.245 17 C -0.193 4.193 18 H 0.069 0.931 19 H 0.093 0.907 20 H 0.063 0.937 21 H 0.111 0.889 22 H 0.108 0.892 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.674 -6.711 -6.824 9.716 hybrid contribution -1.034 0.395 0.088 1.110 sum 0.640 -6.316 -6.735 9.256 Atomic orbital electron populations 1.69997 1.05904 1.26814 1.48854 1.24889 0.94710 0.98767 0.94285 0.86727 0.79775 0.83239 0.78769 1.19884 1.21405 1.20377 1.20273 0.92803 0.88463 1.50502 0.92045 1.18481 0.97753 0.93929 0.84361 1.22959 0.98816 0.99320 0.96746 1.86983 1.29384 1.78353 1.03140 1.24713 1.02386 0.98278 0.98326 1.23231 1.02270 0.95497 0.95923 1.22823 1.01307 0.97135 0.96635 1.22666 1.00655 0.96713 0.94788 1.23059 0.98453 0.95585 1.07405 1.22559 0.92193 1.01261 1.03255 0.93107 0.90705 0.93709 0.88913 0.89220 0.91938 0.90484 0.91468 0.91277 0.89523 0.91683 0.90299 0.89870 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.96 12.93 55.43 0.72 -24.24 16 2 C 0.08 2.12 5.39 -17.82 -0.10 2.03 16 3 Si 0.89 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.48 -13.22 7.55 -34.44 -0.26 -13.48 16 8 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 9 C 0.06 1.40 1.65 -155.66 -0.26 1.14 16 10 C -0.03 -0.68 6.05 37.16 0.22 -0.46 16 11 S -0.21 -4.52 20.38 -107.50 -2.19 -6.71 16 12 C -0.11 -1.80 4.28 -25.92 -0.11 -1.91 16 13 C -0.13 -1.81 7.67 -25.92 -0.20 -2.00 16 14 C -0.14 -1.66 8.08 -25.92 -0.21 -1.87 16 15 C -0.11 -1.54 7.67 -25.92 -0.20 -1.74 16 16 C -0.21 -4.61 9.88 -26.73 -0.26 -4.87 16 17 C -0.15 -3.61 9.46 -26.73 -0.25 -3.86 16 18 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 19 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 20 H 0.04 0.93 7.95 -51.92 -0.41 0.52 16 21 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 22 H 0.09 1.29 8.10 -51.93 -0.42 0.87 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 29 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 273.50 15.07 4.12 4.12 Total: -1.00 -28.18 273.50 -9.02 -37.20 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.02 Total: 0.13 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -1.62 Total: -27.04 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.72 Total: -24.24 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -4.52 SS G_CDS: -2.19 Total: -6.71 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.18 -9.02 -37.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594900039.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.650 kcal (2) G-P(sol) polarization free energy of solvation -28.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds