Wall clock time and date at job start Sun Mar 29 2020 21:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99997 * 2 1 4 4 H 1.48500 * 109.47481 * 239.99732 * 3 2 1 5 5 H 1.48499 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46939 * 119.99986 * 3 2 1 7 7 C 1.37879 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99934 * 173.92043 * 7 2 1 9 9 C 1.50703 * 120.00129 * 353.91620 * 7 2 1 10 10 C 1.53005 * 115.54404 * 84.88830 * 9 7 2 11 11 S 1.81399 * 109.47180 * 39.93749 * 10 9 7 12 12 C 1.81409 * 102.99701 * 179.97438 * 11 10 9 13 13 C 1.53774 * 113.61412 * 272.49638 * 12 11 10 14 14 C 1.53785 * 87.08120 * 220.02272 * 13 12 11 15 15 C 1.53781 * 87.08019 * 25.43349 * 14 13 12 16 16 C 1.52997 * 117.51917 * 230.58946 * 9 7 2 17 17 C 1.52997 * 117.49866 * 299.22273 * 9 7 2 18 18 H 0.97003 * 120.00601 * 354.96419 * 1 2 3 19 19 H 1.08993 * 109.47473 * 279.93458 * 10 9 7 20 20 H 1.08999 * 109.46395 * 159.93427 * 10 9 7 21 21 H 1.09000 * 112.84820 * 43.80603 * 12 11 10 22 22 H 1.09000 * 113.61751 * 334.56539 * 13 12 11 23 23 H 1.09002 * 113.61477 * 105.47074 * 13 12 11 24 24 H 1.09000 * 113.60886 * 270.88684 * 14 13 12 25 25 H 1.08999 * 113.61753 * 139.98163 * 14 13 12 26 26 H 1.09004 * 113.61482 * 220.02314 * 15 14 13 27 27 H 1.08999 * 113.69247 * 89.13259 * 15 14 13 28 28 H 1.09001 * 117.49604 * 214.97053 * 16 9 7 29 29 H 1.08990 * 117.49795 * 359.97438 * 16 9 7 30 30 H 1.09001 * 117.49774 * 359.97139 * 17 9 7 31 31 H 1.09000 * 117.49791 * 144.97446 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0799 -1.1967 -0.0996 9 6 1.2573 -2.4956 0.1372 10 6 0.6978 -3.0760 -1.1632 11 16 1.9034 -2.8413 -2.4981 12 6 1.0739 -3.5812 -3.9318 13 6 1.3253 -5.0913 -4.0773 14 6 1.4365 -4.8471 -5.5915 15 6 1.8472 -3.4053 -5.2494 16 6 1.7470 -3.4829 1.1984 17 6 0.4436 -2.7113 1.4148 18 1 -0.4851 0.8368 0.0737 19 1 -0.2310 -2.5661 -1.4187 20 1 0.5037 -4.1405 -1.0320 21 1 0.0223 -3.3034 -4.0023 22 1 2.2564 -5.4251 -3.6194 23 1 0.4699 -5.7054 -3.7956 24 1 0.4835 -4.9169 -6.1161 25 1 2.2275 -5.4246 -6.0700 26 1 1.4132 -2.6582 -5.9139 27 1 2.9208 -3.2766 -5.1118 28 1 1.6705 -4.5460 0.9702 29 1 2.6100 -3.1914 1.7969 30 1 0.4491 -1.9120 2.1559 31 1 -0.4905 -3.2664 1.3288 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594900039.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:27 Heat of formation + Delta-G solvation = 19.944364 kcal Electronic energy + Delta-G solvation = -12068.522150 eV Core-core repulsion = 10055.701102 eV Total energy + Delta-G solvation = -2012.821048 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.16515 -38.40396 -33.97319 -29.45166 -27.47774 -26.52026 -26.40394 -22.93514 -21.23892 -20.38003 -18.17720 -17.41562 -16.63040 -16.33092 -15.64992 -15.28845 -14.89419 -14.09142 -13.89152 -13.55489 -13.36945 -13.22446 -12.94438 -12.80238 -12.39672 -12.04568 -11.83731 -11.60460 -11.41358 -11.24541 -10.72533 -10.50363 -10.37630 -9.85270 -8.27241 -8.07840 -6.16543 1.11631 1.41564 1.43386 1.49643 2.09934 2.45624 3.21826 3.47475 3.67396 3.70033 3.93042 4.00869 4.23785 4.40821 4.64277 4.64850 4.68059 4.81008 4.86885 4.95295 5.00110 5.02398 5.07558 5.20879 5.22441 5.51678 5.56280 5.61589 5.78897 6.39313 6.84668 7.49775 8.99884 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.032721 B = 0.009950 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.503250 B = 2813.534262 C = 3356.041313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.033 3.967 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.489 4.489 8 H 0.046 0.954 9 C 0.024 3.976 10 C -0.015 4.015 11 S -0.265 6.265 12 C -0.107 4.107 13 C -0.125 4.125 14 C -0.119 4.119 15 C -0.111 4.111 16 C -0.184 4.184 17 C -0.155 4.155 18 H 0.258 0.742 19 H 0.047 0.953 20 H 0.064 0.936 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 -8.587 -7.958 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.167 4.167 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.528 4.528 8 H 0.064 0.936 9 C 0.023 3.977 10 C -0.164 4.164 11 S -0.033 6.033 12 C -0.236 4.236 13 C -0.165 4.165 14 C -0.158 4.158 15 C -0.149 4.149 16 C -0.221 4.221 17 C -0.195 4.195 18 H 0.067 0.933 19 H 0.066 0.934 20 H 0.082 0.918 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.091 0.909 24 H 0.113 0.887 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.934 -7.953 -7.970 11.424 hybrid contribution -1.101 0.736 0.393 1.382 sum 0.832 -7.216 -7.577 10.497 Atomic orbital electron populations 1.70087 1.06852 1.27233 1.50097 1.25499 0.95428 1.01417 0.94358 0.85898 0.78729 0.80119 0.78670 1.20045 1.20955 1.19795 1.20420 0.92253 0.90058 1.50025 0.93589 1.18630 0.99028 0.94246 0.85766 1.22707 0.97559 0.99778 0.96331 1.86996 1.30530 1.80121 1.05663 1.24957 1.01910 1.00243 0.96459 1.23203 1.02533 0.93074 0.97687 1.22762 1.02866 0.95013 0.95177 1.22740 1.00067 0.98941 0.93202 1.23063 0.97404 0.96498 1.05168 1.22479 0.93568 1.01285 1.02143 0.93292 0.93436 0.91778 0.89330 0.89597 0.90850 0.88710 0.89295 0.90433 0.90053 0.88966 0.90382 0.91970 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.19 12.93 21.45 0.28 -51.91 16 2 C 0.03 1.87 5.39 84.66 0.46 2.32 16 3 Si 0.94 44.71 29.55 68.60 2.03 46.74 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.49 -27.18 7.55 25.60 0.19 -26.98 16 8 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 9 C 0.02 1.22 1.65 -52.93 -0.09 1.13 16 10 C -0.02 -0.69 6.05 71.98 0.44 -0.26 16 11 S -0.26 -11.35 20.38 -56.49 -1.15 -12.50 16 12 C -0.11 -3.41 4.28 31.12 0.13 -3.28 16 13 C -0.12 -3.16 7.67 31.12 0.24 -2.92 16 14 C -0.12 -2.38 8.08 31.12 0.25 -2.13 16 15 C -0.11 -2.87 7.67 31.12 0.24 -2.63 16 16 C -0.18 -7.94 9.88 30.59 0.30 -7.63 16 17 C -0.16 -7.28 9.46 30.60 0.29 -7.00 16 18 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 19 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 20 H 0.06 2.60 7.95 -2.39 -0.02 2.58 16 21 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 22 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.08 2.21 8.10 -2.39 -0.02 2.19 16 28 H 0.09 3.45 8.08 -2.39 -0.02 3.43 16 29 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -60.32 273.50 4.68 -55.64 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.07 Total: 11.42 kcal Atomic # 6 Polarization: -51.83 SS G_CDS: 2.45 Total: -49.37 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.28 Total: -51.91 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -11.35 SS G_CDS: -1.15 Total: -12.50 kcal Total: -60.32 4.68 -55.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594900039.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.586 kcal (2) G-P(sol) polarization free energy of solvation -60.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds