Wall clock time and date at job start Sun Mar 29 2020 21:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.50702 * 109.46939 * 66.04774 * 3 2 1 5 5 H 1.07998 * 119.99887 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99910 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00233 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00022 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47165 * 60.00045 * 8 6 4 10 10 H 1.48506 * 109.47145 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46945 * 299.99986 * 8 6 4 12 12 C 1.46901 * 110.99975 * 236.05051 * 2 1 3 13 13 C 1.53000 * 109.46769 * 293.94862 * 12 2 1 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 2 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 12 16 16 C 1.53778 * 113.61727 * 274.13766 * 15 14 13 17 17 C 1.53956 * 87.02468 * 220.04570 * 16 15 14 18 18 C 1.53784 * 113.61658 * 176.52792 * 15 14 13 19 19 H 1.08999 * 109.46894 * 183.95297 * 1 2 3 20 20 H 1.09005 * 109.47342 * 303.95215 * 1 2 3 21 21 H 1.09001 * 109.47121 * 63.95310 * 1 2 3 22 22 H 1.09005 * 109.47192 * 186.04416 * 3 2 1 23 23 H 1.08993 * 109.47271 * 306.04735 * 3 2 1 24 24 H 0.96996 * 120.00144 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46874 * 173.95142 * 12 2 1 26 26 H 1.08992 * 109.47407 * 53.95160 * 12 2 1 27 27 H 1.09002 * 109.47398 * 300.00295 * 13 12 2 28 28 H 1.09001 * 109.47194 * 60.00475 * 13 12 2 29 29 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 30 30 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 31 31 H 1.09000 * 112.84915 * 45.33452 * 15 14 13 32 32 H 1.08996 * 113.61184 * 334.56845 * 16 15 14 33 33 H 1.09000 * 113.61578 * 105.46835 * 16 15 14 34 34 H 1.09002 * 113.53647 * 270.81670 * 17 16 15 35 35 H 1.08996 * 113.66740 * 139.92974 * 17 16 15 36 36 H 1.08998 * 113.61407 * 254.52625 * 18 15 14 37 37 H 1.08996 * 113.61156 * 25.35491 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3491 1.5290 7 7 2.7136 4.0013 0.6159 8 14 1.5825 4.1868 3.1382 9 1 2.1733 3.4292 4.2706 10 1 2.1159 5.5728 3.1388 11 1 0.1053 4.2243 3.2847 12 6 1.9954 -0.7659 -1.1377 13 6 1.6315 -2.2425 -0.9704 14 6 2.1803 -3.0404 -2.1549 15 6 1.8159 -4.5169 -1.9880 16 6 2.8204 -5.3065 -1.1323 17 6 2.6455 -6.4609 -2.1357 18 6 2.2500 -5.3963 -3.1726 19 1 -0.3633 -1.0252 0.0708 20 1 -0.3634 0.5740 0.8525 21 1 -0.3633 0.4513 -0.9233 22 1 3.0797 1.3445 -0.1082 23 1 1.5611 1.9274 -0.8308 24 1 2.9881 4.9174 0.7779 25 1 3.0797 -0.6609 -1.1757 26 1 1.5611 -0.3872 -2.0628 27 1 2.0659 -2.6213 -0.0452 28 1 0.5472 -2.3475 -0.9324 29 1 1.7463 -2.6618 -3.0803 30 1 3.2646 -2.9355 -2.1926 31 1 0.7777 -4.6657 -1.6912 32 1 3.8229 -4.8785 -1.1296 33 1 2.4550 -5.5373 -0.1317 34 1 1.8344 -7.1422 -1.8783 35 1 3.5748 -6.9783 -2.3738 36 1 1.4246 -5.6996 -3.8167 37 1 3.0953 -4.9922 -3.7296 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595347713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:00 Heat of formation + Delta-G solvation = -0.559520 kcal Electronic energy + Delta-G solvation = -13847.505054 eV Core-core repulsion = 11624.593777 eV Total energy + Delta-G solvation = -2222.911277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.01208 -36.75805 -33.20950 -31.99807 -27.80397 -26.79075 -25.68065 -24.84659 -22.66226 -20.87848 -19.96619 -19.31169 -16.27973 -15.72348 -15.11883 -14.82706 -14.64803 -14.02569 -13.57905 -13.22992 -12.55151 -12.50275 -12.35933 -11.90808 -11.50487 -11.33663 -11.19226 -10.92203 -10.82552 -10.70030 -10.55513 -10.43467 -10.21847 -10.12037 -9.97648 -9.63846 -9.12656 -8.39703 -7.15840 -5.98889 -4.00145 3.35936 3.39517 3.42820 4.44596 4.54381 4.60438 4.68236 4.79986 5.09732 5.34059 5.36541 5.42230 5.60876 5.62039 5.69140 5.75075 5.84045 5.90003 5.96365 6.02999 6.15123 6.19873 6.26694 6.31455 6.40560 6.49775 6.65898 6.70367 6.83188 7.35833 7.40682 7.84910 8.15134 8.27473 8.62077 9.07529 9.63807 11.12097 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.070999 B = 0.004715 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.274448 B = 5936.903638 C = 5986.163408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.543 5.543 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.055 3.945 13 C -0.112 4.112 14 C -0.109 4.109 15 C -0.108 4.108 16 C -0.137 4.137 17 C -0.145 4.145 18 C -0.140 4.140 19 H 0.046 0.954 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.029 0.971 23 H -0.011 1.011 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -16.347 -5.855 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.267 5.267 3 C 0.066 3.934 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.074 4.074 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.126 4.126 16 C -0.174 4.174 17 C -0.182 4.182 18 C -0.177 4.177 19 H 0.064 0.936 20 H 0.091 0.909 21 H 0.027 0.973 22 H 0.047 0.953 23 H 0.007 0.993 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.207 -16.382 -5.455 17.308 hybrid contribution -0.452 1.015 0.043 1.112 sum -1.659 -15.367 -5.411 16.376 Atomic orbital electron populations 1.22233 0.89213 0.99432 1.00297 1.62105 1.06787 1.17680 1.40112 1.19728 0.95328 0.81802 0.96495 1.21152 1.34713 0.96931 1.01748 0.91928 1.24998 0.95339 0.97350 0.96994 1.69955 1.38426 1.11476 1.34146 0.86556 0.78675 0.78314 0.83826 1.20153 1.21367 1.20295 1.22064 0.99796 0.93185 0.92326 1.21574 1.00507 0.94792 0.98119 1.21551 1.00839 0.93571 0.98693 1.22541 0.99309 0.94309 0.96475 1.22999 0.99846 0.96640 0.97952 1.22849 1.01258 0.96540 0.97563 1.22953 1.01104 0.97182 0.96466 0.93550 0.90940 0.97330 0.95328 0.99287 0.92913 0.91723 0.96358 0.91457 0.92461 0.92313 0.91999 0.89537 0.90082 0.91651 0.90536 0.91823 0.91922 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.14 60.07 0.55 1.30 16 2 N -0.54 -12.29 4.75 -244.37 -1.16 -13.45 16 3 C 0.19 5.20 4.72 -4.97 -0.02 5.18 16 4 C -0.51 -14.66 8.46 -34.44 -0.29 -14.95 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 13 C -0.11 -1.68 5.14 -26.73 -0.14 -1.82 16 14 C -0.11 -1.34 5.04 -26.74 -0.13 -1.47 16 15 C -0.11 -1.15 3.64 -89.81 -0.33 -1.48 16 16 C -0.14 -1.39 7.65 -25.83 -0.20 -1.59 16 17 C -0.14 -1.28 8.09 -25.82 -0.21 -1.49 16 18 C -0.14 -1.31 7.65 -25.91 -0.20 -1.51 16 19 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 20 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 21 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 22 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 23 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 26 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.85 6.55 -51.93 -0.34 0.51 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.76 7.88 -51.93 -0.41 0.35 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 295.16 15.07 4.45 4.45 Total: -1.00 -29.99 295.16 -8.91 -38.90 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -6.83 Total: -4.95 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.09 Total: -15.34 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.43 Total: -40.03 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.99 -8.91 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.337 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds