Wall clock time and date at job start Sun Mar 29 2020 21:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.50702 * 109.46939 * 66.04774 * 3 2 1 5 5 H 1.07998 * 119.99887 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99910 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00233 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00022 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47165 * 60.00045 * 8 6 4 10 10 H 1.48506 * 109.47145 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46945 * 299.99986 * 8 6 4 12 12 C 1.46901 * 110.99975 * 236.05051 * 2 1 3 13 13 C 1.53000 * 109.46769 * 293.94862 * 12 2 1 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 2 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 12 16 16 C 1.53778 * 113.61727 * 274.13766 * 15 14 13 17 17 C 1.53956 * 87.02468 * 220.04570 * 16 15 14 18 18 C 1.53784 * 113.61658 * 176.52792 * 15 14 13 19 19 H 1.08999 * 109.46894 * 183.95297 * 1 2 3 20 20 H 1.09005 * 109.47342 * 303.95215 * 1 2 3 21 21 H 1.09001 * 109.47121 * 63.95310 * 1 2 3 22 22 H 1.09005 * 109.47192 * 186.04416 * 3 2 1 23 23 H 1.08993 * 109.47271 * 306.04735 * 3 2 1 24 24 H 0.96996 * 120.00144 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46874 * 173.95142 * 12 2 1 26 26 H 1.08992 * 109.47407 * 53.95160 * 12 2 1 27 27 H 1.09002 * 109.47398 * 300.00295 * 13 12 2 28 28 H 1.09001 * 109.47194 * 60.00475 * 13 12 2 29 29 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 30 30 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 31 31 H 1.09000 * 112.84915 * 45.33452 * 15 14 13 32 32 H 1.08996 * 113.61184 * 334.56845 * 16 15 14 33 33 H 1.09000 * 113.61578 * 105.46835 * 16 15 14 34 34 H 1.09002 * 113.53647 * 270.81670 * 17 16 15 35 35 H 1.08996 * 113.66740 * 139.92974 * 17 16 15 36 36 H 1.08998 * 113.61407 * 254.52625 * 18 15 14 37 37 H 1.08996 * 113.61156 * 25.35491 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3491 1.5290 7 7 2.7136 4.0013 0.6159 8 14 1.5825 4.1868 3.1382 9 1 2.1733 3.4292 4.2706 10 1 2.1159 5.5728 3.1388 11 1 0.1053 4.2243 3.2847 12 6 1.9954 -0.7659 -1.1377 13 6 1.6315 -2.2425 -0.9704 14 6 2.1803 -3.0404 -2.1549 15 6 1.8159 -4.5169 -1.9880 16 6 2.8204 -5.3065 -1.1323 17 6 2.6455 -6.4609 -2.1357 18 6 2.2500 -5.3963 -3.1726 19 1 -0.3633 -1.0252 0.0708 20 1 -0.3634 0.5740 0.8525 21 1 -0.3633 0.4513 -0.9233 22 1 3.0797 1.3445 -0.1082 23 1 1.5611 1.9274 -0.8308 24 1 2.9881 4.9174 0.7779 25 1 3.0797 -0.6609 -1.1757 26 1 1.5611 -0.3872 -2.0628 27 1 2.0659 -2.6213 -0.0452 28 1 0.5472 -2.3475 -0.9324 29 1 1.7463 -2.6618 -3.0803 30 1 3.2646 -2.9355 -2.1926 31 1 0.7777 -4.6657 -1.6912 32 1 3.8229 -4.8785 -1.1296 33 1 2.4550 -5.5373 -0.1317 34 1 1.8344 -7.1422 -1.8783 35 1 3.5748 -6.9783 -2.3738 36 1 1.4246 -5.6996 -3.8167 37 1 3.0953 -4.9922 -3.7296 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595347713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:00 Heat of formation + Delta-G solvation = -18.028289 kcal Electronic energy + Delta-G solvation = -13848.262557 eV Core-core repulsion = 11624.593777 eV Total energy + Delta-G solvation = -2223.668780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86557 -38.44504 -35.04018 -33.65545 -29.55960 -28.41070 -26.62543 -26.33098 -24.11364 -22.29484 -21.52078 -20.15041 -18.49648 -16.82995 -16.68696 -16.21756 -16.05186 -15.47189 -15.08076 -14.89183 -13.92619 -13.76724 -13.47691 -13.25890 -13.16447 -12.88594 -12.60491 -12.56394 -12.40740 -12.23420 -11.99273 -11.96263 -11.43783 -11.39008 -11.27016 -10.91615 -10.75052 -10.61991 -9.02412 -8.21193 -6.32190 1.40825 1.44779 1.52716 2.40263 3.10798 3.31889 3.77785 3.83596 3.88308 4.04543 4.14201 4.31800 4.48846 4.52631 4.66138 4.74268 4.80082 4.83251 4.92740 4.94248 5.00320 5.03572 5.08537 5.13736 5.15192 5.18634 5.29925 5.36309 5.46103 5.52982 5.64757 5.71403 6.04314 6.33206 6.64624 6.84019 7.37771 8.90027 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.070999 B = 0.004715 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.274448 B = 5936.903638 C = 5986.163408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.552 5.552 3 C 0.205 3.795 4 C -0.527 4.527 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.973 3.027 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.054 3.946 13 C -0.098 4.098 14 C -0.102 4.102 15 C -0.110 4.110 16 C -0.143 4.143 17 C -0.138 4.138 18 C -0.137 4.137 19 H 0.082 0.918 20 H 0.056 0.944 21 H 0.007 0.993 22 H 0.001 0.999 23 H -0.040 1.040 24 H 0.265 0.735 25 H 0.054 0.946 26 H 0.018 0.982 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -17.613 -5.323 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.276 5.276 3 C 0.079 3.921 4 C -0.565 4.565 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.797 3.203 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.191 1.191 12 C -0.074 4.074 13 C -0.136 4.136 14 C -0.140 4.140 15 C -0.128 4.128 16 C -0.180 4.180 17 C -0.176 4.176 18 C -0.174 4.174 19 H 0.100 0.900 20 H 0.075 0.925 21 H 0.026 0.974 22 H 0.019 0.981 23 H -0.023 1.023 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.018 -17.676 -4.932 18.462 hybrid contribution -0.187 1.385 -0.174 1.408 sum -2.205 -16.291 -5.105 17.214 Atomic orbital electron populations 1.22242 0.87648 1.01399 0.99522 1.62055 1.08281 1.15077 1.42178 1.19403 0.93542 0.84129 0.95047 1.21463 1.35055 0.97644 1.02352 0.91782 1.25972 0.94901 0.98009 1.00916 1.70089 1.39277 1.11945 1.36378 0.85387 0.78897 0.77125 0.78907 1.19239 1.20723 1.19083 1.22177 0.99132 0.95136 0.90990 1.21462 1.00977 0.92047 0.99143 1.21493 1.00606 0.94473 0.97458 1.22549 0.99598 0.93049 0.97652 1.23033 0.99431 0.97329 0.98216 1.22838 1.01964 0.96221 0.96548 1.22946 1.01400 0.96822 0.96245 0.89962 0.92540 0.97402 0.98082 1.02275 0.92621 0.92693 0.96376 0.92015 0.91709 0.92007 0.92180 0.89229 0.90568 0.91778 0.89654 0.91068 0.91057 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.14 127.69 1.17 2.77 16 2 N -0.55 -25.17 4.75 -927.04 -4.41 -29.58 16 3 C 0.21 11.51 4.72 85.56 0.40 11.91 16 4 C -0.53 -30.89 8.46 25.60 0.22 -30.68 16 5 H 0.06 3.66 7.12 -2.91 -0.02 3.64 16 6 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 7 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 8 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 C 0.05 2.02 4.96 86.30 0.43 2.45 16 13 C -0.10 -2.83 5.14 30.59 0.16 -2.67 16 14 C -0.10 -2.37 5.04 30.59 0.15 -2.22 16 15 C -0.11 -2.13 3.64 -10.27 -0.04 -2.17 16 16 C -0.14 -2.66 7.65 31.18 0.24 -2.42 16 17 C -0.14 -2.13 8.09 31.18 0.25 -1.88 16 18 C -0.14 -2.25 7.65 31.12 0.24 -2.01 16 19 H 0.08 2.69 6.47 -2.39 -0.02 2.67 16 20 H 0.06 2.43 6.76 -2.38 -0.02 2.41 16 21 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 22 H 0.00 0.06 7.93 -2.38 -0.02 0.05 16 23 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 26 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 1.77 6.55 -2.39 -0.02 1.75 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.42 7.88 -2.39 -0.02 1.40 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.48 7.92 -2.39 -0.02 1.46 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 Total: -1.00 -64.24 295.16 2.58 -61.66 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.99 Total: 4.82 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 3.68 Total: -26.45 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -4.12 Total: -87.02 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.24 2.58 -61.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.636 kcal (2) G-P(sol) polarization free energy of solvation -64.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds