Wall clock time and date at job start Sun Mar 29 2020 21:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.34819 * 120.04140 * 269.72776 * 11 10 9 13 13 N 1.30572 * 121.53102 * 179.69963 * 12 11 10 14 14 C 1.33579 * 121.53549 * 0.57680 * 13 12 11 15 15 C 1.36292 * 119.89322 * 359.71662 * 14 13 12 16 16 F 1.35105 * 120.71677 * 179.97438 * 15 14 13 17 17 C 1.35033 * 120.03883 * 89.99934 * 11 10 9 18 18 O 1.21995 * 120.71953 * 359.97438 * 17 11 10 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 23 23 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 24 24 H 1.07999 * 119.23493 * 359.97438 * 12 11 10 25 25 H 1.07997 * 120.05492 * 179.69110 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.1803 -5.5178 1.1685 13 7 0.5228 -6.6454 1.2030 14 6 0.1583 -7.2761 0.0834 15 6 0.4682 -6.7392 -1.1304 16 9 0.1081 -7.3633 -2.2733 17 6 1.1742 -5.5166 -1.1675 18 8 1.4714 -5.0006 -2.2323 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.8718 -3.6044 -0.8895 23 1 2.8718 -3.6044 0.8904 24 1 1.4607 -5.0421 2.0967 25 1 -0.3807 -8.2103 0.1398 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596020417.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:43 Heat of formation + Delta-G solvation = -45.214229 kcal Electronic energy + Delta-G solvation = -13570.045269 eV Core-core repulsion = 10884.645213 eV Total energy + Delta-G solvation = -2685.400056 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.67386 -41.47171 -37.50602 -35.47465 -33.13063 -30.51826 -30.16300 -25.95751 -24.20045 -23.57240 -21.29551 -18.83934 -17.62982 -17.28424 -16.65720 -16.17939 -15.04848 -14.78510 -14.73312 -14.34510 -13.61616 -13.45574 -13.04069 -12.88530 -12.52687 -11.80528 -11.10036 -11.01423 -10.43817 -10.41720 -10.18846 -9.85635 -9.55292 -9.35182 -8.54475 -8.15720 -6.18393 -4.24021 0.60608 1.87211 2.61755 3.22593 3.30825 3.33792 3.60494 4.04716 4.12697 4.32331 4.72149 4.98954 5.18527 5.23304 5.57037 5.93854 5.99637 6.33748 6.41781 6.60814 7.32764 7.45664 7.74481 7.77176 7.94015 8.11052 8.81157 9.41856 10.92987 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.054593 B = 0.007265 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.766168 B = 3852.906361 C = 4041.532254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.012 3.988 10 C 0.087 3.913 11 N -0.500 5.500 12 C 0.378 3.622 13 N -0.538 5.538 14 C 0.122 3.878 15 C -0.084 4.084 16 F -0.118 7.118 17 C 0.501 3.499 18 O -0.514 6.514 19 H 0.264 0.736 20 H 0.024 0.976 21 H 0.027 0.973 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.210 0.790 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 -11.158 4.064 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.080 0.920 9 C -0.025 4.025 10 C -0.033 4.033 11 N -0.215 5.215 12 C 0.095 3.905 13 N -0.261 5.261 14 C -0.019 4.019 15 C -0.111 4.111 16 F -0.097 7.097 17 C 0.297 3.703 18 O -0.389 6.389 19 H 0.073 0.927 20 H 0.042 0.958 21 H 0.045 0.955 22 H 0.113 0.887 23 H 0.110 0.890 24 H 0.227 0.773 25 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.992 -11.129 3.922 11.966 hybrid contribution 0.375 1.148 -0.966 1.546 sum 2.367 -9.981 2.955 10.675 Atomic orbital electron populations 1.69970 1.06207 1.27043 1.49543 1.25005 0.94883 0.99553 0.94685 0.86420 0.80013 0.83156 0.77735 1.19538 1.20846 1.20837 1.20983 0.93154 0.90044 1.52420 0.92001 1.19453 0.94009 0.90573 0.98496 1.22725 0.96504 0.79821 1.04252 1.47195 1.44855 1.22790 1.06630 1.25175 0.86532 0.87963 0.90860 1.68447 1.19332 1.09768 1.28565 1.22766 0.94082 0.99017 0.86044 1.19226 1.11027 0.96733 0.84099 1.91486 1.89940 1.80391 1.47836 1.17188 0.82550 0.85890 0.84656 1.91017 1.54884 1.65258 1.27773 0.92676 0.95799 0.95500 0.88682 0.89018 0.77337 0.81149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.12 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.53 -13.91 9.11 -34.44 -0.31 -14.23 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.01 0.30 5.30 -27.88 -0.15 0.15 15 10 C 0.09 1.59 5.32 -4.04 -0.02 1.57 15 11 N -0.50 -8.38 2.57 -121.03 -0.31 -8.70 15 12 C 0.38 4.93 11.48 -90.52 -1.04 3.89 15 13 N -0.54 -7.10 10.39 -14.45 -0.15 -7.25 15 14 C 0.12 1.61 11.18 -17.49 -0.20 1.42 15 15 C -0.08 -1.38 7.36 -39.15 -0.29 -1.67 15 16 F -0.12 -2.02 17.17 2.25 0.04 -1.98 15 17 C 0.50 9.72 7.46 -15.01 -0.11 9.61 15 18 O -0.51 -12.08 16.69 4.92 0.08 -12.00 15 19 H 0.26 7.21 8.31 -40.82 -0.34 6.88 15 20 H 0.02 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.09 1.88 7.46 -51.93 -0.39 1.49 15 23 H 0.09 1.35 8.01 -51.93 -0.42 0.94 15 24 H 0.21 1.87 8.02 -52.49 -0.42 1.45 15 25 H 0.17 1.65 8.06 -52.49 -0.42 1.22 15 LS Contribution 237.51 15.07 3.58 3.58 Total: -1.00 -32.36 237.51 -5.29 -37.66 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -2.03 Total: -4.23 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.21 Total: 2.32 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.27 Total: -41.06 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.36 -5.29 -37.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596020417.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.559 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds