Wall clock time and date at job start Sun Mar 29 2020 21:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.34819 * 120.04140 * 269.72776 * 11 10 9 13 13 N 1.30572 * 121.53102 * 179.69963 * 12 11 10 14 14 C 1.33579 * 121.53549 * 0.57680 * 13 12 11 15 15 C 1.36292 * 119.89322 * 359.71662 * 14 13 12 16 16 F 1.35105 * 120.71677 * 179.97438 * 15 14 13 17 17 C 1.35033 * 120.03883 * 89.99934 * 11 10 9 18 18 O 1.21995 * 120.71953 * 359.97438 * 17 11 10 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 23 23 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 24 24 H 1.07999 * 119.23493 * 359.97438 * 12 11 10 25 25 H 1.07997 * 120.05492 * 179.69110 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.1803 -5.5178 1.1685 13 7 0.5228 -6.6454 1.2030 14 6 0.1583 -7.2761 0.0834 15 6 0.4682 -6.7392 -1.1304 16 9 0.1081 -7.3633 -2.2733 17 6 1.1742 -5.5166 -1.1675 18 8 1.4714 -5.0006 -2.2323 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.8718 -3.6044 -0.8895 23 1 2.8718 -3.6044 0.8904 24 1 1.4607 -5.0421 2.0967 25 1 -0.3807 -8.2103 0.1398 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596020417.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:43 Heat of formation + Delta-G solvation = -66.584880 kcal Electronic energy + Delta-G solvation = -13570.971970 eV Core-core repulsion = 10884.645213 eV Total energy + Delta-G solvation = -2686.326757 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.92745 -42.79403 -38.92015 -36.96269 -35.04166 -31.96445 -31.75384 -27.63630 -25.54392 -25.07656 -23.00589 -20.11503 -19.13402 -18.51911 -18.36012 -17.66405 -16.59743 -16.45381 -16.06965 -15.83231 -15.06729 -14.69483 -14.48168 -14.42585 -14.19781 -13.60158 -12.91673 -12.77245 -12.16392 -12.11934 -11.63367 -11.50556 -11.15220 -11.03465 -10.63101 -9.50391 -8.26265 -6.38637 -0.56017 0.56117 1.27593 1.41810 1.44337 1.56039 2.34360 2.40090 2.82388 3.08137 3.09969 3.63356 3.79741 4.01553 4.24132 4.38697 4.68408 4.74266 5.14874 5.21812 5.38907 5.54138 5.72316 6.06424 6.48812 6.62477 6.77654 7.32356 8.86370 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.054593 B = 0.007265 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.766168 B = 3852.906361 C = 4041.532254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.255 1.255 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.019 3.981 10 C 0.103 3.897 11 N -0.502 5.502 12 C 0.389 3.611 13 N -0.532 5.532 14 C 0.164 3.836 15 C -0.121 4.121 16 F -0.128 7.128 17 C 0.483 3.517 18 O -0.577 6.577 19 H 0.264 0.736 20 H 0.018 0.982 21 H -0.027 1.027 22 H 0.076 0.924 23 H 0.142 0.858 24 H 0.258 0.742 25 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 -11.815 6.354 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.094 0.906 9 C -0.019 4.019 10 C -0.018 4.018 11 N -0.215 5.215 12 C 0.108 3.892 13 N -0.253 5.253 14 C 0.021 3.979 15 C -0.147 4.147 16 F -0.107 7.107 17 C 0.282 3.718 18 O -0.458 6.458 19 H 0.073 0.927 20 H 0.036 0.964 21 H -0.009 1.009 22 H 0.095 0.905 23 H 0.159 0.841 24 H 0.273 0.727 25 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.957 -11.813 6.268 13.696 hybrid contribution 0.026 1.271 -1.573 2.023 sum 2.983 -10.542 4.695 11.920 Atomic orbital electron populations 1.70109 1.08069 1.27979 1.51182 1.25978 0.95666 1.03610 0.94387 0.85325 0.79350 0.78399 0.77522 1.17851 1.21432 1.19995 1.21496 0.94072 0.91042 1.51198 0.90597 1.19263 0.94395 0.92663 0.95557 1.22401 0.94994 0.78600 1.05757 1.47140 1.44827 1.22299 1.07233 1.26238 0.84651 0.87491 0.90853 1.68635 1.19004 1.09680 1.28023 1.23376 0.90992 0.99227 0.84347 1.19244 1.13598 0.96739 0.85167 1.91450 1.90311 1.80402 1.48567 1.17797 0.82550 0.86806 0.84597 1.90965 1.57765 1.67105 1.29962 0.92687 0.96368 1.00853 0.90550 0.84056 0.72668 0.76892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.01 15 2 C 0.00 0.11 5.46 84.66 0.46 0.57 15 3 Si 0.97 42.28 29.54 68.60 2.03 44.31 15 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 15 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 7 C -0.54 -28.35 9.11 25.60 0.23 -28.11 15 8 H 0.08 3.68 7.74 -2.91 -0.02 3.66 15 9 C 0.02 0.92 5.30 29.85 0.16 1.08 15 10 C 0.10 3.67 5.32 86.38 0.46 4.13 15 11 N -0.50 -16.25 2.57 -654.78 -1.68 -17.93 15 12 C 0.39 8.76 11.48 180.31 2.07 10.83 15 13 N -0.53 -11.93 10.39 -199.61 -2.07 -14.00 15 14 C 0.16 3.79 11.18 83.97 0.94 4.73 15 15 C -0.12 -3.95 7.36 22.55 0.17 -3.78 15 16 F -0.13 -4.46 17.17 44.97 0.77 -3.69 15 17 C 0.48 19.11 7.46 84.94 0.63 19.75 15 18 O -0.58 -28.74 16.69 -5.30 -0.09 -28.83 15 19 H 0.26 14.75 8.31 -92.71 -0.77 13.98 15 20 H 0.02 0.88 8.14 -2.39 -0.02 0.87 15 21 H -0.03 -1.60 8.14 -2.39 -0.02 -1.62 15 22 H 0.08 3.05 7.46 -2.39 -0.02 3.03 15 23 H 0.14 3.64 8.01 -2.39 -0.02 3.62 15 24 H 0.26 3.17 8.02 -2.91 -0.02 3.15 15 25 H 0.21 3.10 8.06 -2.91 -0.02 3.08 15 Total: -1.00 -74.26 237.51 5.56 -68.70 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: 1.21 Total: -2.74 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.12 Total: 9.20 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -3.47 Total: -86.94 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.09 Total: -28.83 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.77 Total: -3.69 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -74.26 5.56 -68.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596020417.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.110 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds