Wall clock time and date at job start Sun Mar 29 2020 21:59:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.31005 * 119.99740 * 2 1
4 4 C 1.50705 * 120.00214 * 359.97438 * 3 2 1
5 5 S 1.81404 * 109.46686 * 115.00311 * 4 3 2
6 6 C 1.81402 * 102.99784 * 180.02562 * 5 4 3
7 7 C 1.52994 * 109.47229 * 180.02562 * 6 5 4
8 8 C 1.50701 * 115.55373 * 65.32980 * 7 6 5
9 9 H 1.07997 * 120.00157 * 265.65919 * 8 7 6
10 10 C 1.37878 * 119.99593 * 85.65535 * 8 7 6
11 11 N 1.31506 * 120.00414 * 353.69537 * 10 8 7
12 12 Si 1.86805 * 119.99571 * 173.69675 * 10 8 7
13 13 H 1.48502 * 109.47071 * 359.97438 * 12 10 8
14 14 H 1.48498 * 109.46909 * 120.00199 * 12 10 8
15 15 H 1.48497 * 109.47059 * 240.00034 * 12 10 8
16 16 C 1.53004 * 117.49769 * 279.66357 * 7 6 5
17 17 C 1.53001 * 117.49798 * 211.00384 * 7 6 5
18 18 H 1.09005 * 109.47199 * 300.00535 * 1 2 3
19 19 H 1.09003 * 109.47589 * 60.00342 * 1 2 3
20 20 H 1.08998 * 109.47424 * 180.02562 * 1 2 3
21 21 H 1.07994 * 120.00036 * 179.97438 * 2 1 3
22 22 H 1.07993 * 120.00000 * 180.02562 * 3 2 1
23 23 H 1.08998 * 109.47236 * 235.00847 * 4 3 2
24 24 H 1.09001 * 109.46674 * 355.00714 * 4 3 2
25 25 H 1.09003 * 109.47087 * 300.00111 * 6 5 4
26 26 H 1.09001 * 109.47247 * 59.99461 * 6 5 4
27 27 H 0.97006 * 120.00370 * 174.97307 * 11 10 8
28 28 H 1.09004 * 117.49775 * 359.97438 * 16 7 6
29 29 H 1.08997 * 117.50196 * 145.01722 * 16 7 6
30 30 H 1.08999 * 117.49704 * 214.97594 * 17 7 6
31 31 H 1.09000 * 117.50273 * 359.97438 * 17 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1619 1.1346 0.0000
4 6 1.4084 2.4397 -0.0006
5 16 1.7316 3.3251 1.5494
6 6 0.7550 4.8424 1.3638
7 6 0.9239 5.7133 2.6103
8 6 2.3113 6.2541 2.8423
9 1 2.9975 5.7226 3.4850
10 6 2.7044 7.4273 2.2341
11 7 1.9168 8.0090 1.3562
12 14 4.3561 8.1907 2.6572
13 1 5.0470 7.3479 3.6660
14 1 5.1891 8.2792 1.4311
15 1 4.1447 9.5521 3.2114
16 6 0.0911 5.3528 3.8421
17 6 -0.2563 6.5966 3.0202
18 1 -0.3634 0.5139 0.8900
19 1 -0.3634 0.5138 -0.8900
20 1 -0.3634 -1.0276 0.0005
21 1 2.0469 -0.9352 0.0004
22 1 3.2419 1.1346 -0.0004
23 1 1.7374 3.0488 -0.8425
24 1 0.3402 2.2424 -0.0904
25 1 1.1000 5.3917 0.4878
26 1 -0.2969 4.5847 1.2399
27 1 2.1596 8.8707 0.9827
28 1 -0.5775 4.4953 3.7643
29 1 0.5465 5.5070 4.8203
30 1 -0.0292 7.5686 3.4580
31 1 -1.1529 6.5575 2.4016
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000596339466.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:59:33
Heat of formation + Delta-G solvation = 25.662158 kcal
Electronic energy + Delta-G solvation = -11796.321299 eV
Core-core repulsion = 9783.748194 eV
Total energy + Delta-G solvation = -2012.573106 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 212.093 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-36.54519 -35.82027 -31.91396 -28.94007 -27.63307 -25.69500 -25.13908 -21.09531
-19.32819 -18.29737 -16.25349 -15.77956 -14.96305 -14.60067 -13.93425 -13.70724
-13.48523 -13.08417 -12.60308 -12.41838 -11.80253 -11.69241 -11.22419 -10.99066
-10.89955 -10.83730 -10.44466 -10.19362 -9.60964 -9.46782 -8.81227 -8.67664
-8.41241 -7.98166 -6.74887 -6.02676 -4.07543 1.90581 2.96430 3.30891
3.39369 3.44861 3.57893 4.44231 4.94278 5.17822 5.26647 5.39847
5.43264 5.44068 5.68959 5.87351 5.96916 5.99865 6.14469 6.24062
6.42370 6.55507 6.71219 6.75713 6.83543 6.89276 7.08174 7.42624
7.50830 7.91037 8.42481 8.94785 9.58547 11.06639
Molecular weight = 212.09amu
Principal moments of inertia in cm(-1)
A = 0.037379 B = 0.008146 C = 0.007255
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 748.895474 B = 3436.456204 C = 3858.452468
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.161 4.161
3 C -0.130 4.130
4 C -0.080 4.080
5 S -0.243 6.243
6 C -0.027 4.027
7 C 0.055 3.945
8 C -0.483 4.483
9 H 0.063 0.937
10 C 0.071 3.929
11 N -0.883 5.883
12 Si 0.888 3.112
13 H -0.271 1.271
14 H -0.284 1.284
15 H -0.284 1.284
16 C -0.205 4.205
17 C -0.149 4.149
18 H 0.069 0.931
19 H 0.062 0.938
20 H 0.056 0.944
21 H 0.110 0.890
22 H 0.114 0.886
23 H 0.081 0.919
24 H 0.078 0.922
25 H 0.082 0.918
26 H 0.046 0.954
27 H 0.259 0.741
28 H 0.067 0.933
29 H 0.079 0.921
30 H 0.083 0.917
31 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.823 -10.176 -2.855 10.939
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.183 4.183
3 C -0.149 4.149
4 C -0.227 4.227
5 S -0.012 6.012
6 C -0.175 4.175
7 C 0.053 3.947
8 C -0.520 4.520
9 H 0.081 0.919
10 C -0.132 4.132
11 N -0.520 5.520
12 Si 0.716 3.284
13 H -0.196 1.196
14 H -0.210 1.210
15 H -0.211 1.211
16 C -0.242 4.242
17 C -0.189 4.189
18 H 0.088 0.912
19 H 0.081 0.919
20 H 0.075 0.925
21 H 0.128 0.872
22 H 0.132 0.868
23 H 0.099 0.901
24 H 0.097 0.903
25 H 0.101 0.899
26 H 0.064 0.936
27 H 0.068 0.932
28 H 0.086 0.914
29 H 0.097 0.903
30 H 0.102 0.898
31 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -2.156 -10.333 -2.191 10.781
hybrid contribution 0.101 0.999 -0.935 1.372
sum -2.055 -9.334 -3.126 10.056
Atomic orbital electron populations
1.20865 0.93509 1.01762 1.02172 1.22744 0.96227 0.97512 1.01769
1.22336 0.99634 0.92592 1.00337 1.22486 1.02294 0.97586 1.00373
1.86976 1.68694 1.22026 1.23548 1.23095 0.96773 0.93533 1.04148
1.18455 0.92777 0.95183 0.88258 1.20445 0.96018 1.07424 1.28146
0.91900 1.24947 0.96984 0.97261 0.93983 1.70020 1.37996 1.16255
1.27729 0.86591 0.84362 0.79090 0.78371 1.19579 1.21038 1.21060
1.23016 1.05381 0.98410 0.97399 1.22580 0.98794 0.94551 1.02992
0.91238 0.91877 0.92471 0.87221 0.86763 0.90061 0.90304 0.89919
0.93564 0.93158 0.91446 0.90281 0.89802 0.91909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.40 8.65 36.00 0.31 -1.09 16
2 C -0.16 -1.95 10.26 -36.03 -0.37 -2.32 16
3 C -0.13 -1.84 9.52 -36.02 -0.34 -2.18 16
4 C -0.08 -1.29 6.18 36.01 0.22 -1.07 16
5 S -0.24 -5.02 21.41 -107.50 -2.30 -7.32 16
6 C -0.03 -0.62 5.80 37.15 0.22 -0.40 16
7 C 0.05 1.36 1.34 -155.66 -0.21 1.15 16
8 C -0.48 -13.27 8.49 -34.44 -0.29 -13.57 16
9 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16
10 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16
11 N -0.88 -24.94 12.90 55.43 0.71 -24.22 16
12 Si 0.89 21.39 29.55 -169.99 -5.02 16.37 16
13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
16 C -0.20 -4.55 9.96 -26.69 -0.27 -4.82 16
17 C -0.15 -3.50 9.40 -26.69 -0.25 -3.75 16
18 H 0.07 0.84 7.85 -51.93 -0.41 0.44 16
19 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16
20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
21 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16
22 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16
23 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
24 H 0.08 1.18 5.79 -51.92 -0.30 0.88 16
25 H 0.08 2.04 8.14 -51.92 -0.42 1.62 16
26 H 0.05 0.96 8.09 -51.92 -0.42 0.54 16
27 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16
28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16
29 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16
30 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16
31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16
LS Contribution 278.82 15.07 4.20 4.20
Total: -1.00 -28.23 278.82 -8.36 -36.59
By element:
Atomic # 1 Polarization: 5.45 SS G_CDS: -4.88 Total: 0.57 kcal
Atomic # 6 Polarization: -25.12 SS G_CDS: -1.08 Total: -26.19 kcal
Atomic # 7 Polarization: -24.94 SS G_CDS: 0.71 Total: -24.22 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Atomic # 16 Polarization: -5.02 SS G_CDS: -2.30 Total: -7.32 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -28.23 -8.36 -36.59 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596339466.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.256 kcal
(2) G-P(sol) polarization free energy of solvation -28.232 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.662 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds