Wall clock time and date at job start Sun Mar 29 2020 21:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31005 * 119.99740 * 2 1 4 4 C 1.50705 * 120.00214 * 359.97438 * 3 2 1 5 5 S 1.81404 * 109.46686 * 115.00311 * 4 3 2 6 6 C 1.81402 * 102.99784 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47229 * 180.02562 * 6 5 4 8 8 C 1.50701 * 115.55373 * 65.32980 * 7 6 5 9 9 H 1.07997 * 120.00157 * 265.65919 * 8 7 6 10 10 C 1.37878 * 119.99593 * 85.65535 * 8 7 6 11 11 N 1.31506 * 120.00414 * 353.69537 * 10 8 7 12 12 Si 1.86805 * 119.99571 * 173.69675 * 10 8 7 13 13 H 1.48502 * 109.47071 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46909 * 120.00199 * 12 10 8 15 15 H 1.48497 * 109.47059 * 240.00034 * 12 10 8 16 16 C 1.53004 * 117.49769 * 279.66357 * 7 6 5 17 17 C 1.53001 * 117.49798 * 211.00384 * 7 6 5 18 18 H 1.09005 * 109.47199 * 300.00535 * 1 2 3 19 19 H 1.09003 * 109.47589 * 60.00342 * 1 2 3 20 20 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 21 21 H 1.07994 * 120.00036 * 179.97438 * 2 1 3 22 22 H 1.07993 * 120.00000 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47236 * 235.00847 * 4 3 2 24 24 H 1.09001 * 109.46674 * 355.00714 * 4 3 2 25 25 H 1.09003 * 109.47087 * 300.00111 * 6 5 4 26 26 H 1.09001 * 109.47247 * 59.99461 * 6 5 4 27 27 H 0.97006 * 120.00370 * 174.97307 * 11 10 8 28 28 H 1.09004 * 117.49775 * 359.97438 * 16 7 6 29 29 H 1.08997 * 117.50196 * 145.01722 * 16 7 6 30 30 H 1.08999 * 117.49704 * 214.97594 * 17 7 6 31 31 H 1.09000 * 117.50273 * 359.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4084 2.4397 -0.0006 5 16 1.7316 3.3251 1.5494 6 6 0.7550 4.8424 1.3638 7 6 0.9239 5.7133 2.6103 8 6 2.3113 6.2541 2.8423 9 1 2.9975 5.7226 3.4850 10 6 2.7044 7.4273 2.2341 11 7 1.9168 8.0090 1.3562 12 14 4.3561 8.1907 2.6572 13 1 5.0470 7.3479 3.6660 14 1 5.1891 8.2792 1.4311 15 1 4.1447 9.5521 3.2114 16 6 0.0911 5.3528 3.8421 17 6 -0.2563 6.5966 3.0202 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 2.0469 -0.9352 0.0004 22 1 3.2419 1.1346 -0.0004 23 1 1.7374 3.0488 -0.8425 24 1 0.3402 2.2424 -0.0904 25 1 1.1000 5.3917 0.4878 26 1 -0.2969 4.5847 1.2399 27 1 2.1596 8.8707 0.9827 28 1 -0.5775 4.4953 3.7643 29 1 0.5465 5.5070 4.8203 30 1 -0.0292 7.5686 3.4580 31 1 -1.1529 6.5575 2.4016 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596339466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:33 Heat of formation + Delta-G solvation = 25.662158 kcal Electronic energy + Delta-G solvation = -11796.321299 eV Core-core repulsion = 9783.748194 eV Total energy + Delta-G solvation = -2012.573106 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -36.54519 -35.82027 -31.91396 -28.94007 -27.63307 -25.69500 -25.13908 -21.09531 -19.32819 -18.29737 -16.25349 -15.77956 -14.96305 -14.60067 -13.93425 -13.70724 -13.48523 -13.08417 -12.60308 -12.41838 -11.80253 -11.69241 -11.22419 -10.99066 -10.89955 -10.83730 -10.44466 -10.19362 -9.60964 -9.46782 -8.81227 -8.67664 -8.41241 -7.98166 -6.74887 -6.02676 -4.07543 1.90581 2.96430 3.30891 3.39369 3.44861 3.57893 4.44231 4.94278 5.17822 5.26647 5.39847 5.43264 5.44068 5.68959 5.87351 5.96916 5.99865 6.14469 6.24062 6.42370 6.55507 6.71219 6.75713 6.83543 6.89276 7.08174 7.42624 7.50830 7.91037 8.42481 8.94785 9.58547 11.06639 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.008146 C = 0.007255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.895474 B = 3436.456204 C = 3858.452468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.161 4.161 3 C -0.130 4.130 4 C -0.080 4.080 5 S -0.243 6.243 6 C -0.027 4.027 7 C 0.055 3.945 8 C -0.483 4.483 9 H 0.063 0.937 10 C 0.071 3.929 11 N -0.883 5.883 12 Si 0.888 3.112 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.205 4.205 17 C -0.149 4.149 18 H 0.069 0.931 19 H 0.062 0.938 20 H 0.056 0.944 21 H 0.110 0.890 22 H 0.114 0.886 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.259 0.741 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 -10.176 -2.855 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.183 4.183 3 C -0.149 4.149 4 C -0.227 4.227 5 S -0.012 6.012 6 C -0.175 4.175 7 C 0.053 3.947 8 C -0.520 4.520 9 H 0.081 0.919 10 C -0.132 4.132 11 N -0.520 5.520 12 Si 0.716 3.284 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.242 4.242 17 C -0.189 4.189 18 H 0.088 0.912 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.128 0.872 22 H 0.132 0.868 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.156 -10.333 -2.191 10.781 hybrid contribution 0.101 0.999 -0.935 1.372 sum -2.055 -9.334 -3.126 10.056 Atomic orbital electron populations 1.20865 0.93509 1.01762 1.02172 1.22744 0.96227 0.97512 1.01769 1.22336 0.99634 0.92592 1.00337 1.22486 1.02294 0.97586 1.00373 1.86976 1.68694 1.22026 1.23548 1.23095 0.96773 0.93533 1.04148 1.18455 0.92777 0.95183 0.88258 1.20445 0.96018 1.07424 1.28146 0.91900 1.24947 0.96984 0.97261 0.93983 1.70020 1.37996 1.16255 1.27729 0.86591 0.84362 0.79090 0.78371 1.19579 1.21038 1.21060 1.23016 1.05381 0.98410 0.97399 1.22580 0.98794 0.94551 1.02992 0.91238 0.91877 0.92471 0.87221 0.86763 0.90061 0.90304 0.89919 0.93564 0.93158 0.91446 0.90281 0.89802 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.65 36.00 0.31 -1.09 16 2 C -0.16 -1.95 10.26 -36.03 -0.37 -2.32 16 3 C -0.13 -1.84 9.52 -36.02 -0.34 -2.18 16 4 C -0.08 -1.29 6.18 36.01 0.22 -1.07 16 5 S -0.24 -5.02 21.41 -107.50 -2.30 -7.32 16 6 C -0.03 -0.62 5.80 37.15 0.22 -0.40 16 7 C 0.05 1.36 1.34 -155.66 -0.21 1.15 16 8 C -0.48 -13.27 8.49 -34.44 -0.29 -13.57 16 9 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16 10 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 11 N -0.88 -24.94 12.90 55.43 0.71 -24.22 16 12 Si 0.89 21.39 29.55 -169.99 -5.02 16.37 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C -0.20 -4.55 9.96 -26.69 -0.27 -4.82 16 17 C -0.15 -3.50 9.40 -26.69 -0.25 -3.75 16 18 H 0.07 0.84 7.85 -51.93 -0.41 0.44 16 19 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 22 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 23 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.08 1.18 5.79 -51.92 -0.30 0.88 16 25 H 0.08 2.04 8.14 -51.92 -0.42 1.62 16 26 H 0.05 0.96 8.09 -51.92 -0.42 0.54 16 27 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 278.82 15.07 4.20 4.20 Total: -1.00 -28.23 278.82 -8.36 -36.59 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.88 Total: 0.57 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -1.08 Total: -26.19 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.71 Total: -24.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -2.30 Total: -7.32 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.23 -8.36 -36.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596339466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.256 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds