Wall clock time and date at job start Sun Mar 29 2020 21:59:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.31005 * 119.99740 * 2 1
4 4 C 1.50705 * 120.00214 * 359.97438 * 3 2 1
5 5 S 1.81404 * 109.46686 * 115.00311 * 4 3 2
6 6 C 1.81402 * 102.99784 * 180.02562 * 5 4 3
7 7 C 1.52994 * 109.47229 * 180.02562 * 6 5 4
8 8 C 1.50701 * 115.55373 * 65.32980 * 7 6 5
9 9 H 1.07997 * 120.00157 * 265.65919 * 8 7 6
10 10 C 1.37878 * 119.99593 * 85.65535 * 8 7 6
11 11 N 1.31506 * 120.00414 * 353.69537 * 10 8 7
12 12 Si 1.86805 * 119.99571 * 173.69675 * 10 8 7
13 13 H 1.48502 * 109.47071 * 359.97438 * 12 10 8
14 14 H 1.48498 * 109.46909 * 120.00199 * 12 10 8
15 15 H 1.48497 * 109.47059 * 240.00034 * 12 10 8
16 16 C 1.53004 * 117.49769 * 279.66357 * 7 6 5
17 17 C 1.53001 * 117.49798 * 211.00384 * 7 6 5
18 18 H 1.09005 * 109.47199 * 300.00535 * 1 2 3
19 19 H 1.09003 * 109.47589 * 60.00342 * 1 2 3
20 20 H 1.08998 * 109.47424 * 180.02562 * 1 2 3
21 21 H 1.07994 * 120.00036 * 179.97438 * 2 1 3
22 22 H 1.07993 * 120.00000 * 180.02562 * 3 2 1
23 23 H 1.08998 * 109.47236 * 235.00847 * 4 3 2
24 24 H 1.09001 * 109.46674 * 355.00714 * 4 3 2
25 25 H 1.09003 * 109.47087 * 300.00111 * 6 5 4
26 26 H 1.09001 * 109.47247 * 59.99461 * 6 5 4
27 27 H 0.97006 * 120.00370 * 174.97307 * 11 10 8
28 28 H 1.09004 * 117.49775 * 359.97438 * 16 7 6
29 29 H 1.08997 * 117.50196 * 145.01722 * 16 7 6
30 30 H 1.08999 * 117.49704 * 214.97594 * 17 7 6
31 31 H 1.09000 * 117.50273 * 359.97438 * 17 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1619 1.1346 0.0000
4 6 1.4084 2.4397 -0.0006
5 16 1.7316 3.3251 1.5494
6 6 0.7550 4.8424 1.3638
7 6 0.9239 5.7133 2.6103
8 6 2.3113 6.2541 2.8423
9 1 2.9975 5.7226 3.4850
10 6 2.7044 7.4273 2.2341
11 7 1.9168 8.0090 1.3562
12 14 4.3561 8.1907 2.6572
13 1 5.0470 7.3479 3.6660
14 1 5.1891 8.2792 1.4311
15 1 4.1447 9.5521 3.2114
16 6 0.0911 5.3528 3.8421
17 6 -0.2563 6.5966 3.0202
18 1 -0.3634 0.5139 0.8900
19 1 -0.3634 0.5138 -0.8900
20 1 -0.3634 -1.0276 0.0005
21 1 2.0469 -0.9352 0.0004
22 1 3.2419 1.1346 -0.0004
23 1 1.7374 3.0488 -0.8425
24 1 0.3402 2.2424 -0.0904
25 1 1.1000 5.3917 0.4878
26 1 -0.2969 4.5847 1.2399
27 1 2.1596 8.8707 0.9827
28 1 -0.5775 4.4953 3.7643
29 1 0.5465 5.5070 4.8203
30 1 -0.0292 7.5686 3.4580
31 1 -1.1529 6.5575 2.4016
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000596339466.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:59:32
Heat of formation + Delta-G solvation = 12.195292 kcal
Electronic energy + Delta-G solvation = -11796.905267 eV
Core-core repulsion = 9783.748194 eV
Total energy + Delta-G solvation = -2013.157073 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 212.093 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-38.42094 -36.86967 -34.00110 -30.06888 -29.37387 -27.43472 -26.56385 -22.93153
-21.19979 -19.44852 -18.10831 -17.09752 -16.61944 -16.41752 -15.71652 -15.11253
-14.97744 -14.45182 -14.01214 -13.90186 -13.53422 -13.00408 -12.88988 -12.80491
-12.51393 -12.36988 -12.03486 -11.93854 -11.47327 -11.04228 -10.73545 -10.47538
-9.88906 -9.76860 -8.39138 -8.11761 -6.21750 0.60492 1.38711 1.42008
1.52892 1.66508 2.04207 2.43554 3.17034 3.53687 3.88484 4.08932
4.20363 4.35023 4.41741 4.51421 4.60471 4.61512 4.69199 4.83796
4.94040 4.99735 5.09179 5.17094 5.22385 5.58924 5.62200 5.71562
5.77639 5.87214 6.38831 6.82803 7.46306 8.96886
Molecular weight = 212.09amu
Principal moments of inertia in cm(-1)
A = 0.037379 B = 0.008146 C = 0.007255
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 748.895474 B = 3436.456204 C = 3858.452468
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.132 4.132
3 C -0.162 4.162
4 C -0.061 4.061
5 S -0.280 6.280
6 C -0.016 4.016
7 C 0.026 3.974
8 C -0.496 4.496
9 H 0.046 0.954
10 C 0.028 3.972
11 N -0.907 5.907
12 Si 0.944 3.056
13 H -0.271 1.271
14 H -0.282 1.282
15 H -0.278 1.278
16 C -0.182 4.182
17 C -0.151 4.151
18 H 0.059 0.941
19 H 0.069 0.931
20 H 0.079 0.921
21 H 0.134 0.866
22 H 0.114 0.886
23 H 0.076 0.924
24 H 0.093 0.907
25 H 0.052 0.948
26 H 0.063 0.937
27 H 0.260 0.740
28 H 0.091 0.909
29 H 0.077 0.923
30 H 0.063 0.937
31 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.173 -11.800 -3.085 12.603
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.154 4.154
3 C -0.182 4.182
4 C -0.209 4.209
5 S -0.050 6.050
6 C -0.165 4.165
7 C 0.025 3.975
8 C -0.533 4.533
9 H 0.064 0.936
10 C -0.172 4.172
11 N -0.546 5.546
12 Si 0.770 3.230
13 H -0.195 1.195
14 H -0.208 1.208
15 H -0.203 1.203
16 C -0.220 4.220
17 C -0.191 4.191
18 H 0.078 0.922
19 H 0.088 0.912
20 H 0.098 0.902
21 H 0.152 0.848
22 H 0.132 0.868
23 H 0.095 0.905
24 H 0.112 0.888
25 H 0.071 0.929
26 H 0.082 0.918
27 H 0.069 0.931
28 H 0.109 0.891
29 H 0.095 0.905
30 H 0.081 0.919
31 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -2.509 -11.950 -2.409 12.445
hybrid contribution 0.181 1.364 -0.896 1.642
sum -2.328 -10.585 -3.305 11.331
Atomic orbital electron populations
1.20955 0.92651 1.03317 1.01948 1.23112 0.97016 0.97678 0.97602
1.22270 0.99731 0.92169 1.03989 1.22489 1.03546 0.97812 0.97022
1.86968 1.69084 1.21466 1.27492 1.22799 0.97912 0.93963 1.01802
1.18567 0.92014 0.96663 0.90294 1.20612 0.97283 1.07660 1.27784
0.93552 1.25577 0.99887 0.97750 0.93984 1.70100 1.39476 1.16517
1.28463 0.85718 0.80814 0.78410 0.78041 1.19549 1.20838 1.20347
1.22996 1.04325 0.98347 0.96284 1.22514 0.98987 0.94005 1.03574
0.92206 0.91238 0.90154 0.84794 0.86826 0.90531 0.88846 0.92894
0.91841 0.93120 0.89089 0.90491 0.91876 0.90370
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.48 8.65 71.23 0.62 -1.86 16
2 C -0.13 -2.79 10.26 25.64 0.26 -2.53 16
3 C -0.16 -4.29 9.52 25.64 0.24 -4.05 16
4 C -0.06 -1.92 6.18 71.24 0.44 -1.48 16
5 S -0.28 -11.51 21.41 -56.49 -1.21 -12.72 16
6 C -0.02 -0.75 5.80 71.98 0.42 -0.33 16
7 C 0.03 1.29 1.34 -52.93 -0.07 1.22 16
8 C -0.50 -27.63 8.49 25.60 0.22 -27.41 16
9 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16
10 C 0.03 1.56 5.39 84.66 0.46 2.01 16
11 N -0.91 -51.91 12.90 21.45 0.28 -51.63 16
12 Si 0.94 44.31 29.55 68.60 2.03 46.34 16
13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16
14 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16
15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16
16 C -0.18 -7.92 9.96 30.62 0.30 -7.61 16
17 C -0.15 -7.05 9.40 30.62 0.29 -6.76 16
18 H 0.06 1.29 7.85 -2.38 -0.02 1.27 16
19 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16
20 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
21 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16
22 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16
23 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16
24 H 0.09 2.61 5.79 -2.39 -0.01 2.60 16
25 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16
26 H 0.06 2.58 8.09 -2.39 -0.02 2.57 16
27 H 0.26 14.17 8.32 -92.70 -0.77 13.40 16
28 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16
29 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16
30 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16
31 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16
Total: -1.00 -60.01 278.82 5.34 -54.67
By element:
Atomic # 1 Polarization: 11.07 SS G_CDS: 1.07 Total: 12.14 kcal
Atomic # 6 Polarization: -51.98 SS G_CDS: 3.18 Total: -48.80 kcal
Atomic # 7 Polarization: -51.91 SS G_CDS: 0.28 Total: -51.63 kcal
Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal
Atomic # 16 Polarization: -11.51 SS G_CDS: -1.21 Total: -12.72 kcal
Total: -60.01 5.34 -54.67 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596339466.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.862 kcal
(2) G-P(sol) polarization free energy of solvation -60.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.666 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.195 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds