Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31005 * 119.99740 * 2 1 4 4 C 1.50705 * 120.00214 * 359.97438 * 3 2 1 5 5 S 1.81404 * 109.46686 * 115.00311 * 4 3 2 6 6 C 1.81402 * 102.99784 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47229 * 180.02562 * 6 5 4 8 8 C 1.50701 * 115.55373 * 65.32980 * 7 6 5 9 9 H 1.07997 * 120.00157 * 265.65919 * 8 7 6 10 10 C 1.37878 * 119.99593 * 85.65535 * 8 7 6 11 11 N 1.31506 * 120.00414 * 353.69537 * 10 8 7 12 12 Si 1.86805 * 119.99571 * 173.69675 * 10 8 7 13 13 H 1.48502 * 109.47071 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46909 * 120.00199 * 12 10 8 15 15 H 1.48497 * 109.47059 * 240.00034 * 12 10 8 16 16 C 1.53004 * 117.49769 * 279.66357 * 7 6 5 17 17 C 1.53001 * 117.49798 * 211.00384 * 7 6 5 18 18 H 1.09005 * 109.47199 * 300.00535 * 1 2 3 19 19 H 1.09003 * 109.47589 * 60.00342 * 1 2 3 20 20 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 21 21 H 1.07994 * 120.00036 * 179.97438 * 2 1 3 22 22 H 1.07993 * 120.00000 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47236 * 235.00847 * 4 3 2 24 24 H 1.09001 * 109.46674 * 355.00714 * 4 3 2 25 25 H 1.09003 * 109.47087 * 300.00111 * 6 5 4 26 26 H 1.09001 * 109.47247 * 59.99461 * 6 5 4 27 27 H 0.97006 * 120.00370 * 174.97307 * 11 10 8 28 28 H 1.09004 * 117.49775 * 359.97438 * 16 7 6 29 29 H 1.08997 * 117.50196 * 145.01722 * 16 7 6 30 30 H 1.08999 * 117.49704 * 214.97594 * 17 7 6 31 31 H 1.09000 * 117.50273 * 359.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4084 2.4397 -0.0006 5 16 1.7316 3.3251 1.5494 6 6 0.7550 4.8424 1.3638 7 6 0.9239 5.7133 2.6103 8 6 2.3113 6.2541 2.8423 9 1 2.9975 5.7226 3.4850 10 6 2.7044 7.4273 2.2341 11 7 1.9168 8.0090 1.3562 12 14 4.3561 8.1907 2.6572 13 1 5.0470 7.3479 3.6660 14 1 5.1891 8.2792 1.4311 15 1 4.1447 9.5521 3.2114 16 6 0.0911 5.3528 3.8421 17 6 -0.2563 6.5966 3.0202 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 2.0469 -0.9352 0.0004 22 1 3.2419 1.1346 -0.0004 23 1 1.7374 3.0488 -0.8425 24 1 0.3402 2.2424 -0.0904 25 1 1.1000 5.3917 0.4878 26 1 -0.2969 4.5847 1.2399 27 1 2.1596 8.8707 0.9827 28 1 -0.5775 4.4953 3.7643 29 1 0.5465 5.5070 4.8203 30 1 -0.0292 7.5686 3.4580 31 1 -1.1529 6.5575 2.4016 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596339466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = 12.195292 kcal Electronic energy + Delta-G solvation = -11796.905267 eV Core-core repulsion = 9783.748194 eV Total energy + Delta-G solvation = -2013.157073 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.42094 -36.86967 -34.00110 -30.06888 -29.37387 -27.43472 -26.56385 -22.93153 -21.19979 -19.44852 -18.10831 -17.09752 -16.61944 -16.41752 -15.71652 -15.11253 -14.97744 -14.45182 -14.01214 -13.90186 -13.53422 -13.00408 -12.88988 -12.80491 -12.51393 -12.36988 -12.03486 -11.93854 -11.47327 -11.04228 -10.73545 -10.47538 -9.88906 -9.76860 -8.39138 -8.11761 -6.21750 0.60492 1.38711 1.42008 1.52892 1.66508 2.04207 2.43554 3.17034 3.53687 3.88484 4.08932 4.20363 4.35023 4.41741 4.51421 4.60471 4.61512 4.69199 4.83796 4.94040 4.99735 5.09179 5.17094 5.22385 5.58924 5.62200 5.71562 5.77639 5.87214 6.38831 6.82803 7.46306 8.96886 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.008146 C = 0.007255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.895474 B = 3436.456204 C = 3858.452468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.132 4.132 3 C -0.162 4.162 4 C -0.061 4.061 5 S -0.280 6.280 6 C -0.016 4.016 7 C 0.026 3.974 8 C -0.496 4.496 9 H 0.046 0.954 10 C 0.028 3.972 11 N -0.907 5.907 12 Si 0.944 3.056 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.278 1.278 16 C -0.182 4.182 17 C -0.151 4.151 18 H 0.059 0.941 19 H 0.069 0.931 20 H 0.079 0.921 21 H 0.134 0.866 22 H 0.114 0.886 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.260 0.740 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 -11.800 -3.085 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C -0.182 4.182 4 C -0.209 4.209 5 S -0.050 6.050 6 C -0.165 4.165 7 C 0.025 3.975 8 C -0.533 4.533 9 H 0.064 0.936 10 C -0.172 4.172 11 N -0.546 5.546 12 Si 0.770 3.230 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.203 1.203 16 C -0.220 4.220 17 C -0.191 4.191 18 H 0.078 0.922 19 H 0.088 0.912 20 H 0.098 0.902 21 H 0.152 0.848 22 H 0.132 0.868 23 H 0.095 0.905 24 H 0.112 0.888 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.509 -11.950 -2.409 12.445 hybrid contribution 0.181 1.364 -0.896 1.642 sum -2.328 -10.585 -3.305 11.331 Atomic orbital electron populations 1.20955 0.92651 1.03317 1.01948 1.23112 0.97016 0.97678 0.97602 1.22270 0.99731 0.92169 1.03989 1.22489 1.03546 0.97812 0.97022 1.86968 1.69084 1.21466 1.27492 1.22799 0.97912 0.93963 1.01802 1.18567 0.92014 0.96663 0.90294 1.20612 0.97283 1.07660 1.27784 0.93552 1.25577 0.99887 0.97750 0.93984 1.70100 1.39476 1.16517 1.28463 0.85718 0.80814 0.78410 0.78041 1.19549 1.20838 1.20347 1.22996 1.04325 0.98347 0.96284 1.22514 0.98987 0.94005 1.03574 0.92206 0.91238 0.90154 0.84794 0.86826 0.90531 0.88846 0.92894 0.91841 0.93120 0.89089 0.90491 0.91876 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.65 71.23 0.62 -1.86 16 2 C -0.13 -2.79 10.26 25.64 0.26 -2.53 16 3 C -0.16 -4.29 9.52 25.64 0.24 -4.05 16 4 C -0.06 -1.92 6.18 71.24 0.44 -1.48 16 5 S -0.28 -11.51 21.41 -56.49 -1.21 -12.72 16 6 C -0.02 -0.75 5.80 71.98 0.42 -0.33 16 7 C 0.03 1.29 1.34 -52.93 -0.07 1.22 16 8 C -0.50 -27.63 8.49 25.60 0.22 -27.41 16 9 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 10 C 0.03 1.56 5.39 84.66 0.46 2.01 16 11 N -0.91 -51.91 12.90 21.45 0.28 -51.63 16 12 Si 0.94 44.31 29.55 68.60 2.03 46.34 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 16 C -0.18 -7.92 9.96 30.62 0.30 -7.61 16 17 C -0.15 -7.05 9.40 30.62 0.29 -6.76 16 18 H 0.06 1.29 7.85 -2.38 -0.02 1.27 16 19 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16 20 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 22 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 23 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.09 2.61 5.79 -2.39 -0.01 2.60 16 25 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.06 2.58 8.09 -2.39 -0.02 2.57 16 27 H 0.26 14.17 8.32 -92.70 -0.77 13.40 16 28 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16 29 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -60.01 278.82 5.34 -54.67 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.07 Total: 12.14 kcal Atomic # 6 Polarization: -51.98 SS G_CDS: 3.18 Total: -48.80 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.28 Total: -51.63 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -11.51 SS G_CDS: -1.21 Total: -12.72 kcal Total: -60.01 5.34 -54.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596339466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.862 kcal (2) G-P(sol) polarization free energy of solvation -60.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds