Wall clock time and date at job start Sun Mar 29 2020 21:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 119.99925 * 2 1 4 4 C 1.52999 * 109.47278 * 124.99967 * 3 2 1 5 5 S 1.81406 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.81397 * 103.00166 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47174 * 181.60710 * 6 5 4 8 8 C 1.50696 * 115.54860 * 305.21944 * 7 6 5 9 9 H 1.08002 * 120.00225 * 278.21059 * 8 7 6 10 10 C 1.37878 * 119.99672 * 97.94116 * 8 7 6 11 11 N 1.31521 * 120.00146 * 181.34555 * 10 8 7 12 12 Si 1.86796 * 120.00156 * 1.34746 * 10 8 7 13 13 H 1.48498 * 109.47513 * 92.60368 * 12 10 8 14 14 H 1.48507 * 109.47183 * 212.60603 * 12 10 8 15 15 H 1.48503 * 109.47191 * 332.60206 * 12 10 8 16 16 C 1.52998 * 117.51546 * 90.92566 * 7 6 5 17 17 C 1.52995 * 60.00079 * 107.48178 * 16 7 6 18 18 H 1.07999 * 120.00307 * 359.97438 * 1 2 3 19 19 H 1.08005 * 119.99808 * 180.02562 * 1 2 3 20 20 H 1.07999 * 120.00307 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.47594 * 5.00058 * 3 2 1 22 22 H 1.09008 * 109.47473 * 245.00280 * 3 2 1 23 23 H 1.09004 * 109.46952 * 60.00061 * 4 3 2 24 24 H 1.08995 * 109.47126 * 300.00221 * 4 3 2 25 25 H 1.09005 * 109.46660 * 61.60654 * 6 5 4 26 26 H 1.09009 * 109.47147 * 301.61103 * 6 5 4 27 27 H 0.96990 * 120.00270 * 179.97438 * 11 10 8 28 28 H 1.09007 * 117.49366 * 214.96984 * 16 7 6 29 29 H 1.08992 * 117.50077 * 359.97438 * 16 7 6 30 30 H 1.09004 * 117.49474 * 252.50759 * 17 16 7 31 31 H 1.09001 * 117.52275 * 107.48578 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 16 3.9425 2.9038 1.1812 6 6 5.0239 2.7507 2.6295 7 6 5.8411 4.0337 2.7937 8 6 6.6400 4.4543 1.5872 9 1 7.6007 4.0015 1.3909 10 6 6.1419 5.4132 0.7307 11 7 6.8270 5.7613 -0.3367 12 14 4.4942 6.2180 1.0863 13 1 4.7094 7.4625 1.8674 14 1 3.8177 6.5478 -0.1939 15 1 3.6453 5.2835 1.8682 16 6 5.2518 5.1396 3.6716 17 6 6.4411 4.3175 4.1722 18 1 -0.5400 0.9353 0.0004 19 1 -0.5400 -0.9354 0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3585 2.1316 0.0896 22 1 2.6212 1.4026 -0.9314 23 1 3.7399 0.5065 1.0920 24 1 2.4772 1.2356 2.1129 25 1 5.6982 1.9055 2.4917 26 1 4.4171 2.5898 3.5207 27 1 6.4764 6.4355 -0.9394 28 1 5.4420 6.1715 3.3763 29 1 4.2816 4.9535 4.1319 30 1 6.2532 3.5904 4.9623 31 1 7.4138 4.8082 4.2065 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596341361.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:36 Heat of formation + Delta-G solvation = 34.520409 kcal Electronic energy + Delta-G solvation = -11928.620667 eV Core-core repulsion = 9916.431684 eV Total energy + Delta-G solvation = -2012.188983 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.00707 -35.55052 -32.00016 -30.24778 -28.00269 -25.39845 -23.35757 -21.77240 -19.81734 -18.98699 -16.36046 -15.49305 -15.38673 -14.86835 -14.28461 -13.97718 -13.52422 -13.03509 -12.66025 -12.40269 -12.24109 -11.95096 -11.18500 -11.05361 -10.92337 -10.63757 -10.29254 -10.11548 -9.75778 -9.37900 -8.97589 -8.85353 -8.50002 -8.33619 -6.69218 -6.01881 -4.06849 2.13708 2.43880 3.38172 3.49206 3.55947 3.69994 4.56485 4.90673 4.95511 5.12630 5.26391 5.31305 5.35168 5.65251 5.76193 5.83888 5.90986 6.01289 6.09048 6.14275 6.21710 6.38729 6.45452 6.58237 6.67849 6.74458 7.01980 7.08685 7.76966 8.53677 8.96967 9.60878 11.08922 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.034536 B = 0.009546 C = 0.008555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.544255 B = 2932.327852 C = 3272.071904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C -0.077 4.077 4 C -0.112 4.112 5 S -0.214 6.214 6 C -0.038 4.038 7 C 0.014 3.986 8 C -0.490 4.490 9 H 0.077 0.923 10 C 0.092 3.908 11 N -0.896 5.896 12 Si 0.849 3.151 13 H -0.286 1.286 14 H -0.297 1.297 15 H -0.212 1.212 16 C -0.199 4.199 17 C -0.177 4.177 18 H 0.096 0.904 19 H 0.095 0.905 20 H 0.108 0.892 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.264 0.736 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 -8.391 4.010 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.162 4.162 3 C -0.115 4.115 4 C -0.260 4.260 5 S 0.014 5.986 6 C -0.187 4.187 7 C 0.012 3.988 8 C -0.527 4.527 9 H 0.095 0.905 10 C -0.111 4.111 11 N -0.532 5.532 12 Si 0.678 3.322 13 H -0.213 1.213 14 H -0.224 1.224 15 H -0.136 1.136 16 C -0.236 4.236 17 C -0.216 4.216 18 H 0.114 0.886 19 H 0.113 0.887 20 H 0.126 0.874 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.773 -7.451 3.118 12.679 hybrid contribution -0.662 -0.513 0.956 1.271 sum -10.435 -7.965 4.073 13.745 Atomic orbital electron populations 1.23829 0.95928 1.01680 1.02363 1.22992 0.95940 0.98422 0.98796 1.20450 0.97575 0.95293 0.98227 1.23414 1.00523 1.01188 1.00854 1.87593 1.48016 1.20849 1.42152 1.23052 0.98203 1.02370 0.95034 1.19100 0.97053 0.90814 0.91791 1.20144 1.04790 1.22297 1.05463 0.90456 1.24864 0.96464 0.95662 0.94101 1.69872 1.38579 1.31608 1.13176 0.87211 0.86312 0.80658 0.77980 1.21301 1.22433 1.13592 1.22973 0.96316 0.97771 1.06552 1.22968 0.97469 1.03049 0.98124 0.88577 0.88691 0.87436 0.90872 0.89962 0.90897 0.91312 0.90924 0.92713 0.92641 0.89477 0.90547 0.91039 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 14.32 29.02 0.42 -1.69 16 2 C -0.14 -1.65 9.52 -36.03 -0.34 -1.99 16 3 C -0.08 -1.08 5.66 -27.89 -0.16 -1.24 16 4 C -0.11 -1.75 5.92 37.16 0.22 -1.53 16 5 S -0.21 -4.49 17.22 -107.50 -1.85 -6.34 16 6 C -0.04 -0.78 5.87 37.16 0.22 -0.56 16 7 C 0.01 0.33 1.39 -155.67 -0.22 0.11 16 8 C -0.49 -13.73 8.91 -34.44 -0.31 -14.04 16 9 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 10 C 0.09 2.69 5.29 -17.82 -0.09 2.59 16 11 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 12 Si 0.85 21.76 22.54 -169.99 -3.83 17.93 16 13 H -0.29 -7.25 6.96 56.52 0.39 -6.86 16 14 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 15 H -0.21 -5.05 4.80 56.52 0.27 -4.78 16 16 C -0.20 -4.29 6.91 -26.73 -0.18 -4.48 16 17 C -0.18 -3.57 9.95 -26.73 -0.27 -3.83 16 18 H 0.10 0.99 7.84 -52.49 -0.41 0.58 16 19 H 0.09 0.83 8.06 -52.48 -0.42 0.41 16 20 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 21 H 0.07 1.04 7.79 -51.93 -0.40 0.64 16 22 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 23 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 26 H 0.05 0.99 8.09 -51.92 -0.42 0.57 16 27 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 28 H 0.09 2.01 5.74 -51.92 -0.30 1.71 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 265.29 15.07 4.00 4.00 Total: -1.00 -30.16 265.29 -6.66 -36.82 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.04 Total: 1.22 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -0.72 Total: -26.65 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -3.83 Total: 17.93 kcal Atomic # 16 Polarization: -4.49 SS G_CDS: -1.85 Total: -6.34 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.16 -6.66 -36.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596341361.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.338 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds