Wall clock time and date at job start Sun Mar 29 2020 21:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 119.99925 * 2 1 4 4 C 1.52999 * 109.47278 * 124.99967 * 3 2 1 5 5 S 1.81406 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.81397 * 103.00166 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47174 * 181.60710 * 6 5 4 8 8 C 1.50696 * 115.54860 * 305.21944 * 7 6 5 9 9 H 1.08002 * 120.00225 * 278.21059 * 8 7 6 10 10 C 1.37878 * 119.99672 * 97.94116 * 8 7 6 11 11 N 1.31521 * 120.00146 * 181.34555 * 10 8 7 12 12 Si 1.86796 * 120.00156 * 1.34746 * 10 8 7 13 13 H 1.48498 * 109.47513 * 92.60368 * 12 10 8 14 14 H 1.48507 * 109.47183 * 212.60603 * 12 10 8 15 15 H 1.48503 * 109.47191 * 332.60206 * 12 10 8 16 16 C 1.52998 * 117.51546 * 90.92566 * 7 6 5 17 17 C 1.52995 * 60.00079 * 107.48178 * 16 7 6 18 18 H 1.07999 * 120.00307 * 359.97438 * 1 2 3 19 19 H 1.08005 * 119.99808 * 180.02562 * 1 2 3 20 20 H 1.07999 * 120.00307 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.47594 * 5.00058 * 3 2 1 22 22 H 1.09008 * 109.47473 * 245.00280 * 3 2 1 23 23 H 1.09004 * 109.46952 * 60.00061 * 4 3 2 24 24 H 1.08995 * 109.47126 * 300.00221 * 4 3 2 25 25 H 1.09005 * 109.46660 * 61.60654 * 6 5 4 26 26 H 1.09009 * 109.47147 * 301.61103 * 6 5 4 27 27 H 0.96990 * 120.00270 * 179.97438 * 11 10 8 28 28 H 1.09007 * 117.49366 * 214.96984 * 16 7 6 29 29 H 1.08992 * 117.50077 * 359.97438 * 16 7 6 30 30 H 1.09004 * 117.49474 * 252.50759 * 17 16 7 31 31 H 1.09001 * 117.52275 * 107.48578 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 16 3.9425 2.9038 1.1812 6 6 5.0239 2.7507 2.6295 7 6 5.8411 4.0337 2.7937 8 6 6.6400 4.4543 1.5872 9 1 7.6007 4.0015 1.3909 10 6 6.1419 5.4132 0.7307 11 7 6.8270 5.7613 -0.3367 12 14 4.4942 6.2180 1.0863 13 1 4.7094 7.4625 1.8674 14 1 3.8177 6.5478 -0.1939 15 1 3.6453 5.2835 1.8682 16 6 5.2518 5.1396 3.6716 17 6 6.4411 4.3175 4.1722 18 1 -0.5400 0.9353 0.0004 19 1 -0.5400 -0.9354 0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3585 2.1316 0.0896 22 1 2.6212 1.4026 -0.9314 23 1 3.7399 0.5065 1.0920 24 1 2.4772 1.2356 2.1129 25 1 5.6982 1.9055 2.4917 26 1 4.4171 2.5898 3.5207 27 1 6.4764 6.4355 -0.9394 28 1 5.4420 6.1715 3.3763 29 1 4.2816 4.9535 4.1319 30 1 6.2532 3.5904 4.9623 31 1 7.4138 4.8082 4.2065 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596341361.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:36 Heat of formation + Delta-G solvation = 16.527955 kcal Electronic energy + Delta-G solvation = -11929.400878 eV Core-core repulsion = 9916.431684 eV Total energy + Delta-G solvation = -2012.969194 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.76209 -36.54045 -34.19656 -31.28964 -29.62658 -27.50284 -24.50323 -23.44114 -20.94685 -20.64179 -18.37188 -17.13475 -16.65484 -16.47851 -15.71898 -15.40479 -14.92437 -14.74856 -14.58475 -13.83195 -13.55160 -13.34057 -12.97732 -12.68613 -12.16267 -12.09067 -12.02355 -11.76250 -11.68377 -10.91145 -10.65857 -10.48123 -10.22948 -10.04359 -8.37650 -8.21896 -6.33004 0.78392 1.38484 1.45307 1.48352 1.62389 2.03880 2.44194 3.12306 3.25206 3.92462 4.01376 4.10066 4.21857 4.26550 4.41964 4.42814 4.51639 4.62594 4.75627 4.83770 4.85230 5.04130 5.05760 5.14362 5.30343 5.46647 5.71782 5.73014 5.88788 6.28595 6.72568 7.38332 8.88466 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.034536 B = 0.009546 C = 0.008555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.544255 B = 2932.327852 C = 3272.071904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 C -0.076 4.076 4 C -0.084 4.084 5 S -0.300 6.300 6 C -0.021 4.021 7 C -0.019 4.019 8 C -0.484 4.484 9 H 0.031 0.969 10 C 0.041 3.959 11 N -0.949 5.949 12 Si 0.903 3.097 13 H -0.284 1.284 14 H -0.314 1.314 15 H -0.180 1.180 16 C -0.196 4.196 17 C -0.154 4.154 18 H 0.096 0.904 19 H 0.117 0.883 20 H 0.121 0.879 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.261 0.739 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.066 -10.056 6.212 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.175 4.175 3 C -0.114 4.114 4 C -0.231 4.231 5 S -0.072 6.072 6 C -0.169 4.169 7 C -0.021 4.021 8 C -0.521 4.521 9 H 0.049 0.951 10 C -0.157 4.157 11 N -0.589 5.589 12 Si 0.730 3.270 13 H -0.211 1.211 14 H -0.243 1.243 15 H -0.102 1.102 16 C -0.232 4.232 17 C -0.193 4.193 18 H 0.114 0.886 19 H 0.135 0.865 20 H 0.139 0.861 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.147 -9.131 5.359 16.113 hybrid contribution 0.114 -0.104 0.255 0.299 sum -12.032 -9.235 5.615 16.174 Atomic orbital electron populations 1.24051 0.95595 1.02767 0.99975 1.22894 0.96277 0.97484 1.00876 1.20423 0.97226 0.96759 0.96994 1.23387 1.00101 0.97254 1.02404 1.87781 1.49429 1.26110 1.43872 1.22882 0.97938 1.00454 0.95618 1.19049 0.98780 0.93103 0.91119 1.20322 1.03436 1.21119 1.07237 0.95076 1.25598 0.99663 0.96558 0.93839 1.70022 1.40751 1.33194 1.14934 0.86419 0.82940 0.80210 0.77387 1.21088 1.24308 1.10196 1.23002 0.98309 0.96178 1.05761 1.23022 0.96647 1.02725 0.96913 0.88580 0.86533 0.86120 0.91387 0.91400 0.89934 0.89431 0.90849 0.89226 0.92979 0.91451 0.87526 0.86892 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 14.32 67.78 0.97 -2.31 16 2 C -0.16 -3.16 9.52 25.65 0.24 -2.91 16 3 C -0.08 -1.98 5.66 29.85 0.17 -1.81 16 4 C -0.08 -2.38 5.92 71.98 0.43 -1.96 16 5 S -0.30 -12.09 17.22 -56.49 -0.97 -13.07 16 6 C -0.02 -0.79 5.87 71.98 0.42 -0.37 16 7 C -0.02 -0.84 1.39 -52.93 -0.07 -0.92 16 8 C -0.48 -27.73 8.91 25.60 0.23 -27.50 16 9 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 10 C 0.04 2.47 5.29 84.65 0.45 2.92 16 11 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 12 Si 0.90 45.64 22.54 68.60 1.55 47.19 16 13 H -0.28 -14.01 6.96 99.48 0.69 -13.32 16 14 H -0.31 -16.61 7.11 99.48 0.71 -15.91 16 15 H -0.18 -8.08 4.80 99.48 0.48 -7.60 16 16 C -0.20 -7.81 6.91 30.59 0.21 -7.60 16 17 C -0.15 -5.72 9.95 30.59 0.30 -5.41 16 18 H 0.10 1.69 7.84 -2.91 -0.02 1.66 16 19 H 0.12 1.57 8.06 -2.91 -0.02 1.55 16 20 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 21 H 0.07 1.82 7.79 -2.39 -0.02 1.80 16 22 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 23 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.09 2.79 8.09 -2.39 -0.02 2.77 16 27 H 0.26 16.15 8.31 -92.72 -0.77 15.38 16 28 H 0.07 2.97 5.74 -2.38 -0.01 2.96 16 29 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 30 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 31 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -67.67 265.29 5.05 -62.62 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.83 Total: 12.34 kcal Atomic # 6 Polarization: -51.21 SS G_CDS: 3.35 Total: -47.86 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.30 Total: -61.22 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.55 Total: 47.19 kcal Atomic # 16 Polarization: -12.09 SS G_CDS: -0.97 Total: -13.07 kcal Total: -67.67 5.05 -62.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596341361.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.147 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds