Wall clock time and date at job start Sun Mar 29 2020 21:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00335 * 2 1 4 4 C 1.50701 * 119.99973 * 179.97438 * 2 1 3 5 5 S 1.81398 * 109.47140 * 105.00037 * 4 2 1 6 6 C 1.81404 * 102.99929 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47182 * 180.02562 * 6 5 4 8 8 C 1.50707 * 115.54590 * 294.76343 * 7 6 5 9 9 H 1.08000 * 119.99778 * 95.08291 * 8 7 6 10 10 C 1.37873 * 119.99924 * 274.80154 * 8 7 6 11 11 N 1.31517 * 120.00094 * 6.34722 * 10 8 7 12 12 Si 1.86801 * 119.99932 * 186.35128 * 10 8 7 13 13 H 1.48499 * 109.46951 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47198 * 120.00033 * 12 10 8 15 15 H 1.48508 * 109.46958 * 239.99876 * 12 10 8 16 16 C 1.52992 * 117.49950 * 80.43326 * 7 6 5 17 17 C 1.52993 * 117.50197 * 149.09579 * 7 6 5 18 18 H 1.08005 * 120.00035 * 0.02562 * 1 2 3 19 19 H 1.08000 * 120.00759 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47002 * 180.02562 * 3 2 1 21 21 H 1.09001 * 109.46737 * 300.00177 * 3 2 1 22 22 H 1.09000 * 109.47085 * 59.99630 * 3 2 1 23 23 H 1.09004 * 109.47232 * 344.99994 * 4 2 1 24 24 H 1.08995 * 109.47307 * 225.00287 * 4 2 1 25 25 H 1.08999 * 109.46992 * 59.99769 * 6 5 4 26 26 H 1.09001 * 109.46816 * 300.00238 * 6 5 4 27 27 H 0.97002 * 120.00152 * 182.28789 * 11 10 8 28 28 H 1.09009 * 117.49997 * 215.00443 * 16 7 6 29 29 H 1.08995 * 117.50336 * 0.02562 * 16 7 6 30 30 H 1.09003 * 117.49914 * 359.97438 * 17 7 6 31 31 H 1.09000 * 117.50387 * 144.96939 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 16 2.7491 -1.6082 -1.6512 6 6 3.6038 -3.1959 -1.4532 7 6 4.2474 -3.5979 -2.7818 8 6 3.2879 -3.8888 -3.9070 9 1 3.0374 -3.1143 -4.6169 10 6 2.7343 -5.1451 -4.0335 11 7 2.9438 -6.0526 -3.1048 12 14 1.6870 -5.5585 -5.5240 13 1 1.6048 -4.3736 -6.4152 14 1 2.3010 -6.6917 -6.2616 15 1 0.3219 -5.9388 -5.0796 16 6 5.5848 -2.9491 -3.1438 17 6 5.5364 -4.4199 -2.7224 18 1 -0.5400 0.9353 -0.0004 19 1 -0.5401 -0.9352 0.0004 20 1 3.1352 1.1058 -0.0005 21 1 1.8002 1.8767 -0.8900 22 1 1.8002 1.8767 0.8899 23 1 1.3854 -2.1160 0.2669 24 1 2.8744 -1.2562 0.7272 25 1 2.8870 -3.9592 -1.1507 26 1 4.3762 -3.1000 -0.6901 27 1 2.5821 -6.9465 -3.2098 28 1 5.7709 -2.7326 -4.1958 29 1 6.0066 -2.2363 -2.4353 30 1 5.9262 -4.6740 -1.7367 31 1 5.6903 -5.1714 -3.4968 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596345958.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:38 Heat of formation + Delta-G solvation = 25.994659 kcal Electronic energy + Delta-G solvation = -11842.385965 eV Core-core repulsion = 9829.827278 eV Total energy + Delta-G solvation = -2012.558687 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -36.55066 -35.79993 -31.91459 -28.06990 -27.32568 -26.83065 -25.24364 -21.09938 -19.34176 -18.33136 -16.18121 -15.24798 -14.67241 -14.58057 -14.29585 -13.77731 -13.54681 -13.13880 -12.59274 -12.12415 -11.71107 -11.62668 -11.44578 -10.99000 -10.94177 -10.84737 -10.44360 -10.19328 -9.60020 -9.49716 -8.80971 -8.66916 -8.41858 -7.98211 -6.74886 -6.02852 -4.07116 1.91924 2.98301 3.30808 3.39118 3.44718 3.57268 4.43987 4.93040 5.03241 5.27180 5.40318 5.52687 5.70088 5.74268 5.90411 5.99516 6.04578 6.07434 6.23871 6.42285 6.55352 6.71385 6.75449 6.83544 6.97339 7.07941 7.42453 7.50619 7.91002 8.42606 8.94816 9.58714 11.06674 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.008982 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.104608 B = 3116.435080 C = 3626.952868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.100 4.100 3 C -0.116 4.116 4 C -0.069 4.069 5 S -0.239 6.239 6 C -0.028 4.028 7 C 0.056 3.944 8 C -0.483 4.483 9 H 0.063 0.937 10 C 0.071 3.929 11 N -0.882 5.882 12 Si 0.889 3.111 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.205 4.205 17 C -0.150 4.150 18 H 0.098 0.902 19 H 0.098 0.902 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.259 0.741 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 8.473 6.128 10.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.101 4.101 3 C -0.173 4.173 4 C -0.217 4.217 5 S -0.008 6.008 6 C -0.177 4.177 7 C 0.054 3.946 8 C -0.521 4.521 9 H 0.081 0.919 10 C -0.132 4.132 11 N -0.519 5.519 12 Si 0.717 3.283 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.242 4.242 17 C -0.190 4.190 18 H 0.116 0.884 19 H 0.117 0.883 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.267 8.912 5.291 10.442 hybrid contribution -0.462 -1.296 0.387 1.430 sum -1.730 7.616 5.678 9.656 Atomic orbital electron populations 1.23640 0.95066 1.01861 1.02380 1.21225 0.95052 0.94398 0.99418 1.20811 1.00611 0.94270 1.01596 1.22436 1.01874 0.97746 0.99639 1.87002 1.70052 1.30366 1.13407 1.23099 0.99933 0.93822 1.00803 1.18447 0.86403 0.97736 0.92014 1.20423 1.25138 0.96534 1.10005 0.91910 1.24955 0.95840 0.96466 0.95940 1.70021 1.45531 1.03954 1.32443 0.86576 0.80147 0.78389 0.83212 1.19571 1.21059 1.21043 1.23011 1.05593 0.95532 1.00082 1.22586 1.03869 0.92600 0.99924 0.88368 0.88319 0.91549 0.91417 0.91946 0.90316 0.90516 0.89903 0.93575 0.93178 0.90291 0.91440 0.91915 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 13.94 29.02 0.40 -2.07 16 2 C -0.10 -1.42 5.31 -101.06 -0.54 -1.96 16 3 C -0.12 -1.41 10.05 36.01 0.36 -1.05 16 4 C -0.07 -1.13 6.07 36.01 0.22 -0.91 16 5 S -0.24 -4.93 21.41 -107.50 -2.30 -7.23 16 6 C -0.03 -0.64 5.80 37.16 0.22 -0.43 16 7 C 0.06 1.38 1.33 -155.66 -0.21 1.17 16 8 C -0.48 -13.30 8.49 -34.44 -0.29 -13.59 16 9 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16 10 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 11 N -0.88 -24.92 12.92 55.43 0.72 -24.21 16 12 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.20 -4.55 9.96 -26.70 -0.27 -4.81 16 17 C -0.15 -3.52 9.42 -26.70 -0.25 -3.77 16 18 H 0.10 1.09 8.05 -52.48 -0.42 0.67 16 19 H 0.10 1.30 7.90 -52.49 -0.41 0.89 16 20 H 0.07 0.83 8.00 -51.93 -0.42 0.41 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 1.28 7.86 -51.92 -0.41 0.87 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.08 2.05 8.14 -51.92 -0.42 1.63 16 26 H 0.05 0.96 8.09 -51.92 -0.42 0.54 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.08 1.74 8.14 -51.92 -0.42 1.32 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -28.25 282.13 -7.81 -36.07 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.01 Total: 0.28 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -0.45 Total: -25.58 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.72 Total: -24.21 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -2.30 Total: -7.23 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.25 -7.81 -36.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596345958.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.062 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds