Wall clock time and date at job start Sun Mar 29 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00335 * 2 1 4 4 C 1.50701 * 119.99973 * 179.97438 * 2 1 3 5 5 S 1.81398 * 109.47140 * 105.00037 * 4 2 1 6 6 C 1.81404 * 102.99929 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47182 * 180.02562 * 6 5 4 8 8 C 1.50707 * 115.54590 * 294.76343 * 7 6 5 9 9 H 1.08000 * 119.99778 * 95.08291 * 8 7 6 10 10 C 1.37873 * 119.99924 * 274.80154 * 8 7 6 11 11 N 1.31517 * 120.00094 * 6.34722 * 10 8 7 12 12 Si 1.86801 * 119.99932 * 186.35128 * 10 8 7 13 13 H 1.48499 * 109.46951 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47198 * 120.00033 * 12 10 8 15 15 H 1.48508 * 109.46958 * 239.99876 * 12 10 8 16 16 C 1.52992 * 117.49950 * 80.43326 * 7 6 5 17 17 C 1.52993 * 117.50197 * 149.09579 * 7 6 5 18 18 H 1.08005 * 120.00035 * 0.02562 * 1 2 3 19 19 H 1.08000 * 120.00759 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47002 * 180.02562 * 3 2 1 21 21 H 1.09001 * 109.46737 * 300.00177 * 3 2 1 22 22 H 1.09000 * 109.47085 * 59.99630 * 3 2 1 23 23 H 1.09004 * 109.47232 * 344.99994 * 4 2 1 24 24 H 1.08995 * 109.47307 * 225.00287 * 4 2 1 25 25 H 1.08999 * 109.46992 * 59.99769 * 6 5 4 26 26 H 1.09001 * 109.46816 * 300.00238 * 6 5 4 27 27 H 0.97002 * 120.00152 * 182.28789 * 11 10 8 28 28 H 1.09009 * 117.49997 * 215.00443 * 16 7 6 29 29 H 1.08995 * 117.50336 * 0.02562 * 16 7 6 30 30 H 1.09003 * 117.49914 * 359.97438 * 17 7 6 31 31 H 1.09000 * 117.50387 * 144.96939 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 16 2.7491 -1.6082 -1.6512 6 6 3.6038 -3.1959 -1.4532 7 6 4.2474 -3.5979 -2.7818 8 6 3.2879 -3.8888 -3.9070 9 1 3.0374 -3.1143 -4.6169 10 6 2.7343 -5.1451 -4.0335 11 7 2.9438 -6.0526 -3.1048 12 14 1.6870 -5.5585 -5.5240 13 1 1.6048 -4.3736 -6.4152 14 1 2.3010 -6.6917 -6.2616 15 1 0.3219 -5.9388 -5.0796 16 6 5.5848 -2.9491 -3.1438 17 6 5.5364 -4.4199 -2.7224 18 1 -0.5400 0.9353 -0.0004 19 1 -0.5401 -0.9352 0.0004 20 1 3.1352 1.1058 -0.0005 21 1 1.8002 1.8767 -0.8900 22 1 1.8002 1.8767 0.8899 23 1 1.3854 -2.1160 0.2669 24 1 2.8744 -1.2562 0.7272 25 1 2.8870 -3.9592 -1.1507 26 1 4.3762 -3.1000 -0.6901 27 1 2.5821 -6.9465 -3.2098 28 1 5.7709 -2.7326 -4.1958 29 1 6.0066 -2.2363 -2.4353 30 1 5.9262 -4.6740 -1.7367 31 1 5.6903 -5.1714 -3.4968 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596345958.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:37 Heat of formation + Delta-G solvation = 12.473532 kcal Electronic energy + Delta-G solvation = -11842.972285 eV Core-core repulsion = 9829.827278 eV Total energy + Delta-G solvation = -2013.145007 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 212.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.42475 -36.88980 -34.00255 -29.64009 -28.68312 -27.95221 -27.29272 -22.93551 -21.21403 -19.53186 -18.10422 -16.84628 -16.62177 -15.84047 -15.71550 -15.33029 -15.08273 -14.79529 -13.92347 -13.81177 -13.22325 -13.07303 -12.92649 -12.81539 -12.59739 -12.36842 -12.10421 -12.01630 -11.47149 -11.08484 -10.73997 -10.47816 -9.88102 -9.78740 -8.38932 -8.11993 -6.21421 0.58672 1.38494 1.41668 1.52582 1.67095 2.03368 2.43170 3.17312 3.53299 3.81033 3.92058 4.19730 4.38778 4.41525 4.60241 4.61344 4.68850 4.74366 4.88739 4.94076 4.99477 5.03690 5.15594 5.22116 5.58711 5.61748 5.65939 5.77456 5.91959 6.38791 6.82746 7.46365 8.96768 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.008982 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.104608 B = 3116.435080 C = 3626.952868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.121 4.121 3 C -0.112 4.112 4 C -0.055 4.055 5 S -0.271 6.271 6 C -0.018 4.018 7 C 0.027 3.973 8 C -0.496 4.496 9 H 0.046 0.954 10 C 0.028 3.972 11 N -0.907 5.907 12 Si 0.945 3.055 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.282 1.282 16 C -0.182 4.182 17 C -0.152 4.152 18 H 0.124 0.876 19 H 0.094 0.906 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.259 0.741 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 9.746 6.674 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.122 4.122 3 C -0.169 4.169 4 C -0.203 4.203 5 S -0.041 6.041 6 C -0.167 4.167 7 C 0.026 3.974 8 C -0.534 4.534 9 H 0.065 0.935 10 C -0.172 4.172 11 N -0.545 5.545 12 Si 0.771 3.229 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.208 1.208 16 C -0.219 4.219 17 C -0.192 4.192 18 H 0.142 0.858 19 H 0.112 0.888 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.104 0.896 23 H 0.093 0.907 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.647 10.183 5.828 11.848 hybrid contribution -0.399 -1.636 0.266 1.705 sum -2.047 8.547 6.094 10.694 Atomic orbital electron populations 1.23886 0.94811 1.02917 1.00046 1.21338 0.95531 0.94173 1.01193 1.20809 0.99893 0.93377 1.02809 1.22482 1.02244 0.98971 0.96590 1.86974 1.70536 1.28670 1.17914 1.22807 0.99700 0.94116 1.00043 1.18555 0.86873 0.99586 0.92424 1.20586 1.25854 0.96303 1.10628 0.93537 1.25586 0.96985 0.96460 0.98215 1.70104 1.46535 1.04146 1.33683 0.85710 0.78704 0.78118 0.80395 1.19520 1.20404 1.20814 1.22993 1.03349 0.95028 1.00562 1.22519 1.03613 0.92946 1.00118 0.85842 0.88789 0.92213 0.91271 0.89611 0.90710 0.89114 0.92899 0.91880 0.93154 0.90476 0.89056 0.90414 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 13.94 67.79 0.94 -3.21 16 2 C -0.12 -3.19 5.31 -16.48 -0.09 -3.27 16 3 C -0.11 -2.44 10.05 71.24 0.72 -1.72 16 4 C -0.06 -1.73 6.07 71.24 0.43 -1.30 16 5 S -0.27 -11.05 21.41 -56.49 -1.21 -12.26 16 6 C -0.02 -0.83 5.80 71.98 0.42 -0.41 16 7 C 0.03 1.34 1.33 -52.93 -0.07 1.27 16 8 C -0.50 -27.57 8.49 25.60 0.22 -27.35 16 9 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 10 C 0.03 1.53 5.39 84.65 0.46 1.99 16 11 N -0.91 -51.77 12.92 21.45 0.28 -51.49 16 12 Si 0.94 44.28 29.54 68.60 2.03 46.30 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 C -0.18 -7.88 9.96 30.61 0.30 -7.58 16 17 C -0.15 -7.10 9.42 30.62 0.29 -6.81 16 18 H 0.12 2.30 8.05 -2.91 -0.02 2.27 16 19 H 0.09 2.30 7.90 -2.91 -0.02 2.28 16 20 H 0.06 1.37 8.00 -2.39 -0.02 1.35 16 21 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 2.37 7.86 -2.39 -0.02 2.35 16 24 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.06 2.57 8.09 -2.39 -0.02 2.55 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 29 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 30 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -59.65 282.13 5.78 -53.86 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.07 Total: 11.98 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 3.62 Total: -48.40 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.28 Total: -51.49 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -11.05 SS G_CDS: -1.21 Total: -12.26 kcal Total: -59.65 5.78 -53.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596345958.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.338 kcal (2) G-P(sol) polarization free energy of solvation -59.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds