Wall clock time and date at job start Sun Mar 29 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47491 * 300.00304 * 3 2 1 6 6 H 1.48511 * 109.47242 * 60.00282 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 H 1.08998 * 112.91752 * 51.20443 * 14 12 11 16 16 C 1.53734 * 113.70423 * 279.72060 * 14 12 11 17 17 C 1.51514 * 86.60525 * 245.60131 * 16 14 12 18 18 O 1.21279 * 134.17287 * 179.97438 * 17 16 14 19 19 N 1.35839 * 91.64698 * 0.02562 * 17 16 14 20 20 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 22 22 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 23 23 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 24 24 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 25 25 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 26 26 H 1.08996 * 113.69022 * 0.02808 * 16 14 12 27 27 H 1.09000 * 113.68900 * 131.07635 * 16 14 12 28 28 H 0.96999 * 132.37498 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0007 13 8 3.3992 -6.0981 -0.0003 14 6 1.4327 -7.4032 -0.0076 15 1 0.6796 -7.4543 -0.7939 16 6 0.9111 -7.8229 1.3762 17 6 1.8680 -8.9939 1.2820 18 8 2.1389 -9.9247 2.0109 19 7 2.3037 -8.5901 0.0605 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8898 23 1 2.8717 -3.6045 0.8894 24 1 2.8717 -3.6045 -0.8905 25 1 0.5425 -4.9308 -0.0011 26 1 1.1585 -7.1180 2.1698 27 1 -0.1396 -8.1130 1.3787 28 1 2.9594 -8.9561 -0.5536 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597495828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:22 Heat of formation + Delta-G solvation = -56.495166 kcal Electronic energy + Delta-G solvation = -13369.450041 eV Core-core repulsion = 10807.021112 eV Total energy + Delta-G solvation = -2562.428929 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.05252 -38.77942 -36.47110 -34.98440 -32.94579 -30.12926 -28.73988 -26.27674 -24.31238 -21.18615 -20.62470 -19.74234 -17.68596 -17.39691 -16.65494 -16.34981 -15.34638 -14.93360 -14.75141 -14.42788 -13.45023 -13.27709 -13.08406 -12.45400 -12.35223 -12.06175 -11.28548 -11.10684 -10.69043 -10.43812 -10.28190 -10.18215 -9.74811 -9.40811 -9.09548 -8.69098 -8.45825 -6.15807 -4.18781 2.29791 2.55846 2.97131 3.24410 3.32435 3.36956 3.54648 3.77554 4.30708 4.36625 4.72036 4.86726 5.21727 5.30000 5.48049 6.02171 6.21941 6.23052 6.61635 6.70061 6.72615 7.42611 7.52453 7.78542 7.82885 8.11415 8.19403 8.41716 8.87278 9.46667 10.95714 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.081522 B = 0.005066 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.384564 B = 5526.085518 C = 5665.265448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.714 5.714 12 C 0.500 3.500 13 O -0.537 6.537 14 C 0.112 3.888 15 H 0.127 0.873 16 C -0.166 4.166 17 C 0.535 3.465 18 O -0.507 6.507 19 N -0.722 5.722 20 H 0.262 0.738 21 H 0.023 0.977 22 H 0.024 0.976 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.401 0.599 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 -12.136 -0.888 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.364 5.364 12 C 0.283 3.717 13 O -0.414 6.414 14 C 0.003 3.997 15 H 0.144 0.856 16 C -0.207 4.207 17 C 0.320 3.680 18 O -0.380 6.380 19 N -0.381 5.381 20 H 0.072 0.928 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.235 0.765 26 H 0.137 0.863 27 H 0.143 0.857 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.150 -12.521 -0.489 12.583 hybrid contribution 0.268 0.936 -0.467 1.079 sum -0.882 -11.586 -0.956 11.658 Atomic orbital electron populations 1.69958 1.06080 1.26854 1.50315 1.24992 0.94906 0.99451 0.94911 0.86458 0.80166 0.83291 0.77662 1.19588 1.20908 1.20899 1.21076 0.93295 0.90351 1.51440 0.92198 1.19334 0.94169 0.91036 0.97970 1.21796 0.96141 0.81204 1.01012 1.46290 1.10739 1.06299 1.73061 1.20404 0.88347 0.85276 0.77718 1.90727 1.13683 1.87451 1.49575 1.22341 0.91599 0.85695 1.00109 0.85557 1.23936 1.02451 0.97474 0.96812 1.21943 0.81083 0.84820 0.80125 1.90769 1.64713 1.32949 1.49588 1.48388 1.42860 1.25864 1.21031 0.92840 0.95823 0.95802 0.92355 0.92369 0.76550 0.86265 0.85687 0.75174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 13.29 55.43 0.74 -24.53 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.52 -13.97 9.11 -34.44 -0.31 -14.28 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.01 0.29 5.09 -27.89 -0.14 0.14 15 10 C 0.12 2.36 5.61 -4.04 -0.02 2.34 15 11 N -0.71 -10.61 5.56 -60.29 -0.33 -10.95 15 12 C 0.50 7.25 7.35 -10.98 -0.08 7.17 15 13 O -0.54 -10.24 16.68 5.55 0.09 -10.15 15 14 C 0.11 1.08 5.06 -68.38 -0.35 0.74 15 15 H 0.13 0.79 8.14 -51.93 -0.42 0.37 15 16 C -0.17 -1.44 7.90 -27.14 -0.21 -1.66 15 17 C 0.54 6.66 9.85 -10.27 -0.10 6.56 15 18 O -0.51 -8.24 18.03 5.56 0.10 -8.14 15 19 N -0.72 -7.94 6.89 -59.14 -0.41 -8.35 15 20 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 21 H 0.02 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.06 1.20 8.14 -51.93 -0.42 0.77 15 25 H 0.40 4.80 8.47 -40.82 -0.35 4.45 15 26 H 0.12 1.07 8.00 -51.93 -0.42 0.66 15 27 H 0.13 0.68 8.14 -51.93 -0.42 0.26 15 28 H 0.41 4.12 8.96 -40.82 -0.37 3.75 15 LS Contribution 257.06 15.07 3.87 3.87 Total: -1.00 -33.31 257.06 -5.48 -38.79 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.20 Total: 1.10 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.32 Total: 2.53 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.01 Total: -43.83 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.19 Total: -18.29 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.31 -5.48 -38.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597495828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.701 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds