Wall clock time and date at job start Sun Mar 29 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47491 * 300.00304 * 3 2 1 6 6 H 1.48511 * 109.47242 * 60.00282 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 H 1.08998 * 112.91752 * 51.20443 * 14 12 11 16 16 C 1.53734 * 113.70423 * 279.72060 * 14 12 11 17 17 C 1.51514 * 86.60525 * 245.60131 * 16 14 12 18 18 O 1.21279 * 134.17287 * 179.97438 * 17 16 14 19 19 N 1.35839 * 91.64698 * 0.02562 * 17 16 14 20 20 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 22 22 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 23 23 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 24 24 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 25 25 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 26 26 H 1.08996 * 113.69022 * 0.02808 * 16 14 12 27 27 H 1.09000 * 113.68900 * 131.07635 * 16 14 12 28 28 H 0.96999 * 132.37498 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0007 13 8 3.3992 -6.0981 -0.0003 14 6 1.4327 -7.4032 -0.0076 15 1 0.6796 -7.4543 -0.7939 16 6 0.9111 -7.8229 1.3762 17 6 1.8680 -8.9939 1.2820 18 8 2.1389 -9.9247 2.0109 19 7 2.3037 -8.5901 0.0605 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8898 23 1 2.8717 -3.6045 0.8894 24 1 2.8717 -3.6045 -0.8905 25 1 0.5425 -4.9308 -0.0011 26 1 1.1585 -7.1180 2.1698 27 1 -0.1396 -8.1130 1.3787 28 1 2.9594 -8.9561 -0.5536 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597495828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:22 Heat of formation + Delta-G solvation = -84.252907 kcal Electronic energy + Delta-G solvation = -13370.653707 eV Core-core repulsion = 10807.021112 eV Total energy + Delta-G solvation = -2563.632595 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.02523 -39.99529 -37.54141 -36.53736 -34.81687 -31.77907 -29.69843 -27.58242 -25.89516 -22.90371 -21.82062 -20.61806 -18.86280 -18.52948 -18.18912 -17.56475 -16.59626 -16.45579 -16.30072 -15.87263 -14.87417 -14.60571 -14.31006 -14.06489 -13.24056 -13.18936 -13.00478 -12.85265 -12.51969 -12.21495 -11.67666 -11.46570 -11.23309 -11.19435 -10.58808 -10.21871 -10.02668 -8.22836 -6.32032 1.34350 1.41355 1.43656 1.46292 1.55335 1.96429 2.39309 2.52672 2.94521 3.12569 3.50963 3.74361 4.16359 4.51297 4.52724 4.71223 4.82019 4.89874 5.17151 5.29062 5.51431 5.63519 5.81351 5.82338 6.19160 6.60216 6.81723 7.18643 7.26148 7.37258 8.88758 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.081522 B = 0.005066 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.384564 B = 5526.085518 C = 5665.265448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.704 5.704 12 C 0.500 3.500 13 O -0.587 6.587 14 C 0.125 3.875 15 H 0.177 0.823 16 C -0.146 4.146 17 C 0.522 3.478 18 O -0.554 6.554 19 N -0.722 5.722 20 H 0.265 0.735 21 H 0.014 0.986 22 H 0.013 0.987 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.418 0.582 26 H 0.118 0.882 27 H 0.170 0.830 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -12.190 -1.221 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.356 5.356 12 C 0.285 3.715 13 O -0.467 6.467 14 C 0.016 3.984 15 H 0.194 0.806 16 C -0.186 4.186 17 C 0.309 3.691 18 O -0.431 6.431 19 N -0.381 5.381 20 H 0.074 0.926 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.255 0.745 26 H 0.136 0.864 27 H 0.187 0.813 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.086 -12.574 -0.844 12.774 hybrid contribution 0.566 0.940 -0.385 1.163 sum -1.520 -11.635 -1.229 11.798 Atomic orbital electron populations 1.70042 1.07327 1.27858 1.51098 1.25790 0.95764 1.02821 0.94577 0.85477 0.78969 0.79228 0.77848 1.19218 1.20298 1.20357 1.21512 0.93521 0.92172 1.51303 0.92613 1.19141 0.94217 0.91377 0.96795 1.21234 0.95108 0.82323 0.99811 1.46015 1.11487 1.05034 1.73017 1.21237 0.87930 0.86441 0.75847 1.90716 1.16152 1.88215 1.51586 1.22487 0.91138 0.82118 1.02618 0.80563 1.24008 1.03971 0.94913 0.95729 1.22655 0.81573 0.85021 0.79870 1.90738 1.66370 1.35117 1.50899 1.48571 1.42856 1.25848 1.20794 0.92568 0.96806 0.96828 0.93708 0.93566 0.74493 0.86381 0.81276 0.75042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.02 13.29 21.45 0.28 -51.73 15 2 C 0.01 0.51 5.46 84.66 0.46 0.98 15 3 Si 0.96 42.42 29.54 68.60 2.03 44.45 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 7 C -0.55 -29.25 9.11 25.60 0.23 -29.02 15 8 H 0.06 2.95 7.74 -2.91 -0.02 2.93 15 9 C 0.02 1.03 5.09 29.85 0.15 1.18 15 10 C 0.14 5.41 5.61 86.38 0.48 5.89 15 11 N -0.70 -19.69 5.56 -463.06 -2.57 -22.26 15 12 C 0.50 13.55 7.35 87.66 0.64 14.19 15 13 O -0.59 -22.04 16.68 -3.04 -0.05 -22.09 15 14 C 0.12 1.98 5.06 44.22 0.22 2.21 15 15 H 0.18 1.21 8.14 -2.39 -0.02 1.19 15 16 C -0.15 -2.02 7.90 30.37 0.24 -1.78 15 17 C 0.52 12.14 9.85 87.64 0.86 13.00 15 18 O -0.55 -17.86 18.03 -3.03 -0.05 -17.92 15 19 N -0.72 -14.46 6.89 -458.82 -3.16 -17.62 15 20 H 0.27 14.06 8.31 -92.70 -0.77 13.29 15 21 H 0.01 0.66 8.14 -2.39 -0.02 0.64 15 22 H 0.01 0.65 8.14 -2.38 -0.02 0.63 15 23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 25 H 0.42 8.87 8.47 -92.71 -0.79 8.08 15 26 H 0.12 1.77 8.00 -2.39 -0.02 1.75 15 27 H 0.17 0.91 8.14 -2.39 -0.02 0.89 15 28 H 0.41 7.75 8.96 -92.71 -0.83 6.92 15 Total: -1.00 -73.21 257.06 -0.65 -73.86 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -0.42 Total: 6.66 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 3.30 Total: 6.66 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -5.45 Total: -91.61 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.11 Total: -40.01 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -73.21 -0.65 -73.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597495828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.397 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds