Wall clock time and date at job start Sun Mar 29 2020 21:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00093 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 179.97438 * 12 11 10 15 15 H 1.09001 * 112.41996 * 309.97687 * 14 12 11 16 16 C 1.52890 * 113.04918 * 79.37349 * 14 12 11 17 17 C 1.50569 * 82.45261 * 115.45553 * 16 14 12 18 18 O 1.21284 * 131.84642 * 180.02562 * 17 16 14 19 19 N 1.34610 * 96.30542 * 359.97438 * 17 16 14 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 24 24 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 25 25 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 26 26 H 1.09002 * 114.37545 * 228.84819 * 16 14 12 27 27 H 1.08997 * 114.37555 * 2.05596 * 16 14 12 28 28 H 0.97000 * 134.66397 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0018 13 8 3.3995 -6.0980 -0.0023 14 6 1.4333 -7.4031 -0.0018 15 1 0.6652 -7.4397 0.7706 16 6 0.9088 -7.7914 -1.3844 17 6 1.8687 -8.9379 -1.2080 18 8 2.1485 -9.8764 -1.9235 19 7 2.3135 -8.5724 0.0088 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 -0.8905 24 1 2.8720 -3.6043 0.8894 25 1 0.5428 -4.9308 -0.0011 26 1 -0.1415 -8.0826 -1.4016 27 1 1.1790 -7.0966 -2.1795 28 1 2.9559 -8.9366 0.6377 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597495842.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:24 Heat of formation + Delta-G solvation = -52.341726 kcal Electronic energy + Delta-G solvation = -13400.427070 eV Core-core repulsion = 10838.178248 eV Total energy + Delta-G solvation = -2562.248822 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.39302 -38.79610 -36.41500 -34.98050 -32.94473 -30.18309 -28.99573 -26.16916 -24.23122 -21.15318 -20.59319 -19.96394 -17.67908 -17.39618 -16.70088 -16.36824 -15.34490 -14.89274 -14.73092 -14.40292 -13.42749 -13.23229 -13.16451 -12.49164 -12.35271 -12.05023 -11.29090 -11.09090 -10.70427 -10.42724 -10.31185 -10.16670 -9.74553 -9.42004 -9.09130 -8.68460 -8.45260 -6.15440 -4.18569 2.33922 2.59480 3.02028 3.25756 3.32259 3.35887 3.52518 3.69104 4.34102 4.36788 4.70538 4.86327 5.21950 5.29053 5.47703 5.99836 6.21922 6.23341 6.61982 6.73124 6.79855 7.42667 7.52731 7.78757 7.83054 8.09589 8.19557 8.42151 8.87240 9.46827 10.96020 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.082277 B = 0.005106 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.232210 B = 5482.687922 C = 5625.965801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.714 5.714 12 C 0.497 3.503 13 O -0.538 6.538 14 C 0.103 3.897 15 H 0.122 0.878 16 C -0.160 4.160 17 C 0.524 3.476 18 O -0.519 6.519 19 N -0.713 5.713 20 H 0.263 0.737 21 H 0.024 0.976 22 H 0.023 0.977 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.401 0.599 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -12.045 0.884 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.364 5.364 12 C 0.280 3.720 13 O -0.415 6.415 14 C -0.007 4.007 15 H 0.139 0.861 16 C -0.201 4.201 17 C 0.309 3.691 18 O -0.393 6.393 19 N -0.374 5.374 20 H 0.072 0.928 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.234 0.766 26 H 0.150 0.850 27 H 0.144 0.856 28 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.178 -12.447 0.535 12.514 hybrid contribution 0.283 0.938 0.479 1.090 sum -0.895 -11.510 1.014 11.589 Atomic orbital electron populations 1.69944 1.06079 1.26971 1.50228 1.24989 0.94900 0.99430 0.94896 0.86511 0.79837 0.82964 0.78250 1.20517 1.21135 1.19742 1.21039 0.93258 0.90372 1.51578 0.92255 1.19330 0.94159 0.91024 0.97960 1.21792 0.96144 0.81247 1.00989 1.46304 1.10729 1.06331 1.73053 1.20513 0.88405 0.85392 0.77713 1.90721 1.13702 1.87450 1.49614 1.22074 0.92093 0.86275 1.00220 0.86060 1.23520 1.02309 0.97524 0.96711 1.21832 0.81390 0.85342 0.80573 1.90738 1.64008 1.32878 1.51698 1.47498 1.43533 1.25640 1.20766 0.92780 0.95795 0.95845 0.92371 0.92393 0.76556 0.85041 0.85645 0.73430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 13.29 55.43 0.74 -24.54 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 15 10 C 0.12 2.36 5.61 -4.04 -0.02 2.34 15 11 N -0.71 -10.63 5.56 -60.30 -0.33 -10.97 15 12 C 0.50 7.23 7.30 -10.98 -0.08 7.14 15 13 O -0.54 -10.27 16.63 5.56 0.09 -10.17 15 14 C 0.10 1.01 4.73 -81.48 -0.39 0.62 15 15 H 0.12 0.77 8.14 -51.93 -0.42 0.35 15 16 C -0.16 -1.38 8.14 -28.00 -0.23 -1.61 15 17 C 0.52 6.57 9.38 -23.38 -0.22 6.35 15 18 O -0.52 -8.58 18.03 5.55 0.10 -8.48 15 19 N -0.71 -7.89 7.07 -77.54 -0.55 -8.44 15 20 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.40 4.80 8.47 -40.82 -0.35 4.45 15 26 H 0.13 0.69 8.14 -51.93 -0.42 0.26 15 27 H 0.13 1.11 8.00 -51.93 -0.42 0.70 15 28 H 0.42 4.20 8.96 -40.82 -0.37 3.83 15 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -33.65 256.58 -5.80 -39.45 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.20 Total: 1.23 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.49 Total: 2.22 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.15 Total: -43.95 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.19 Total: -18.65 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.65 -5.80 -39.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597495842.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.892 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds