Wall clock time and date at job start Sun Mar 29 2020 21:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00093 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 179.97438 * 12 11 10 15 15 H 1.09001 * 112.41996 * 309.97687 * 14 12 11 16 16 C 1.52890 * 113.04918 * 79.37349 * 14 12 11 17 17 C 1.50569 * 82.45261 * 115.45553 * 16 14 12 18 18 O 1.21284 * 131.84642 * 180.02562 * 17 16 14 19 19 N 1.34610 * 96.30542 * 359.97438 * 17 16 14 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 24 24 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 25 25 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 26 26 H 1.09002 * 114.37545 * 228.84819 * 16 14 12 27 27 H 1.08997 * 114.37555 * 2.05596 * 16 14 12 28 28 H 0.97000 * 134.66397 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0018 13 8 3.3995 -6.0980 -0.0023 14 6 1.4333 -7.4031 -0.0018 15 1 0.6652 -7.4397 0.7706 16 6 0.9088 -7.7914 -1.3844 17 6 1.8687 -8.9379 -1.2080 18 8 2.1485 -9.8764 -1.9235 19 7 2.3135 -8.5724 0.0088 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 -0.8905 24 1 2.8720 -3.6043 0.8894 25 1 0.5428 -4.9308 -0.0011 26 1 -0.1415 -8.0826 -1.4016 27 1 1.1790 -7.0966 -2.1795 28 1 2.9559 -8.9366 0.6377 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597495842.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:24 Heat of formation + Delta-G solvation = -80.801123 kcal Electronic energy + Delta-G solvation = -13401.661162 eV Core-core repulsion = 10838.178248 eV Total energy + Delta-G solvation = -2563.482914 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.34817 -40.02904 -37.49899 -36.53284 -34.81566 -31.79462 -29.98311 -27.53268 -25.78347 -22.87453 -21.76363 -20.84119 -18.87811 -18.50296 -18.20782 -17.62228 -16.59898 -16.46073 -16.27807 -15.83017 -14.85427 -14.54288 -14.31006 -14.10321 -13.29328 -13.19683 -12.98861 -12.84643 -12.52675 -12.20616 -11.68193 -11.47831 -11.27670 -11.18771 -10.58139 -10.21874 -10.02202 -8.22511 -6.31895 1.38271 1.42819 1.43725 1.48360 1.54187 2.01670 2.40329 2.53156 2.84732 3.12783 3.54322 3.74227 4.14780 4.51533 4.52843 4.71166 4.82453 4.89982 5.14709 5.29481 5.51445 5.63700 5.81925 5.91249 6.19286 6.60423 6.81653 7.17390 7.26115 7.37360 8.88852 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.082277 B = 0.005106 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.232210 B = 5482.687922 C = 5625.965801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.704 5.704 12 C 0.497 3.503 13 O -0.587 6.587 14 C 0.115 3.885 15 H 0.172 0.828 16 C -0.139 4.139 17 C 0.510 3.490 18 O -0.569 6.569 19 N -0.714 5.714 20 H 0.266 0.734 21 H 0.014 0.986 22 H 0.013 0.987 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.418 0.582 26 H 0.177 0.823 27 H 0.125 0.875 28 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -12.084 1.164 12.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.356 5.356 12 C 0.283 3.717 13 O -0.467 6.467 14 C 0.006 3.994 15 H 0.189 0.811 16 C -0.179 4.179 17 C 0.297 3.703 18 O -0.447 6.447 19 N -0.373 5.373 20 H 0.074 0.926 21 H 0.032 0.968 22 H 0.031 0.969 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.255 0.745 26 H 0.195 0.805 27 H 0.143 0.857 28 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.121 -12.485 0.837 12.691 hybrid contribution 0.582 0.934 0.412 1.175 sum -1.539 -11.551 1.249 11.720 Atomic orbital electron populations 1.70032 1.07330 1.27932 1.51025 1.25789 0.95758 1.02809 0.94553 0.85530 0.78666 0.78929 0.78441 1.19914 1.20574 1.19303 1.21488 0.93526 0.92193 1.51433 0.92605 1.19138 0.94209 0.91365 0.96787 1.21230 0.95112 0.82371 0.99777 1.46031 1.11480 1.05051 1.73013 1.21352 0.87988 0.86542 0.75838 1.90710 1.16176 1.88213 1.51630 1.22225 0.91735 0.82623 1.02781 0.81131 1.23674 1.03830 0.94779 0.95570 1.22656 0.81828 0.85518 0.80329 1.90709 1.65781 1.35127 1.53039 1.47692 1.43488 1.25617 1.20530 0.92558 0.96793 0.96853 0.93695 0.93639 0.74492 0.80528 0.85699 0.73238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.04 13.29 21.45 0.28 -51.76 15 2 C 0.01 0.54 5.46 84.65 0.46 1.00 15 3 Si 0.96 42.39 29.54 68.60 2.03 44.42 15 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 7 C -0.55 -29.33 9.11 25.60 0.23 -29.10 15 8 H 0.06 2.95 7.74 -2.91 -0.02 2.93 15 9 C 0.02 1.04 5.09 29.85 0.15 1.20 15 10 C 0.14 5.41 5.61 86.38 0.48 5.89 15 11 N -0.70 -19.71 5.56 -463.07 -2.57 -22.28 15 12 C 0.50 13.51 7.30 87.66 0.64 14.15 15 13 O -0.59 -22.10 16.63 -3.01 -0.05 -22.15 15 14 C 0.12 1.85 4.73 36.29 0.17 2.02 15 15 H 0.17 1.22 8.14 -2.39 -0.02 1.20 15 16 C -0.14 -1.88 8.14 29.77 0.24 -1.64 15 17 C 0.51 11.94 9.38 79.70 0.75 12.69 15 18 O -0.57 -18.62 18.03 -3.04 -0.05 -18.67 15 19 N -0.71 -14.40 7.07 -517.72 -3.66 -18.06 15 20 H 0.27 14.11 8.31 -92.71 -0.77 13.34 15 21 H 0.01 0.66 8.14 -2.39 -0.02 0.64 15 22 H 0.01 0.63 8.14 -2.39 -0.02 0.62 15 23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.42 8.86 8.47 -92.70 -0.79 8.08 15 26 H 0.18 0.86 8.14 -2.39 -0.02 0.85 15 27 H 0.12 1.83 8.00 -2.39 -0.02 1.81 15 28 H 0.42 7.93 8.96 -92.71 -0.83 7.10 15 Total: -1.00 -74.03 256.58 -1.32 -75.35 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -0.42 Total: 6.95 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 3.13 Total: 6.20 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -5.95 Total: -92.11 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.10 Total: -40.82 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -74.03 -1.32 -75.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597495842.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.451 kcal (2) G-P(sol) polarization free energy of solvation -74.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds