Wall clock time and date at job start Sun Mar 29 2020 21:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.34711 * 126.50785 * 34.68879 * 4 2 1 6 6 N 1.34042 * 108.35392 * 179.83221 * 5 4 2 7 7 C 1.31393 * 109.29130 * 0.44329 * 6 5 4 8 8 S 1.76198 * 125.80832 * 179.71021 * 7 6 5 9 9 C 1.76195 * 100.00292 * 0.02562 * 8 7 6 10 10 H 1.08000 * 119.99688 * 0.02562 * 9 8 7 11 11 C 1.38647 * 120.00104 * 180.02562 * 9 8 7 12 12 N 1.31654 * 120.00188 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99940 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46755 * 90.00669 * 13 11 9 15 15 H 1.48507 * 109.47233 * 210.00156 * 13 11 9 16 16 H 1.48492 * 109.47219 * 330.00318 * 13 11 9 17 17 N 1.36252 * 108.37902 * 359.72566 * 7 6 5 18 18 H 0.96991 * 126.50213 * 180.02562 * 17 7 6 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.08001 * 125.82650 * 0.02562 * 5 4 2 27 27 H 0.96997 * 120.00367 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.4601 -0.7030 -2.4500 6 7 2.2104 -1.4491 -3.2729 7 6 3.2336 -1.9346 -2.6068 8 16 4.4905 -2.9792 -3.2654 9 6 3.9360 -3.1114 -4.9326 10 1 3.0369 -2.6009 -5.2447 11 6 4.6539 -3.8708 -5.8438 12 7 4.2398 -3.9692 -7.0897 13 14 6.2094 -4.7532 -5.3041 14 1 5.8638 -6.1136 -4.8193 15 1 7.1425 -4.8599 -6.4544 16 1 6.8583 -3.9876 -4.2097 17 7 3.1571 -1.4932 -1.3200 18 1 3.7792 -1.6935 -0.6034 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 0.5533 -0.1820 -2.7196 27 1 4.7423 -4.5002 -7.7272 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600584880.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:30 Heat of formation + Delta-G solvation = 34.394358 kcal Electronic energy + Delta-G solvation = -11592.717320 eV Core-core repulsion = 9476.982527 eV Total energy + Delta-G solvation = -2115.734792 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.15020 -35.34026 -32.52636 -31.74001 -28.06820 -27.11526 -25.67637 -22.54034 -21.18185 -19.71796 -18.26342 -16.70303 -15.19539 -14.89744 -14.51301 -14.05901 -13.87570 -13.29986 -12.89580 -12.81860 -12.15247 -11.69940 -11.46472 -11.22070 -11.14105 -10.98368 -10.92000 -10.03973 -9.41677 -9.25999 -9.17856 -8.89546 -8.43543 -6.74409 -6.30715 -4.07665 2.46946 2.54243 3.19925 3.28003 3.30029 3.81988 3.83927 4.19712 4.63332 4.88884 4.92253 5.06997 5.17229 5.52545 5.59580 5.71290 5.78613 5.85606 5.92546 6.09655 6.23658 6.27003 6.78548 7.34503 7.81081 7.95516 8.70494 8.82162 9.09186 10.78689 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.071709 B = 0.007394 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.371331 B = 3785.870278 C = 4020.322778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 C -0.142 4.142 4 C -0.047 4.047 5 C -0.013 4.013 6 N -0.480 5.480 7 C 0.224 3.776 8 S 0.015 5.985 9 C -0.511 4.511 10 H 0.121 0.879 11 C 0.096 3.904 12 N -0.869 5.869 13 Si 0.845 3.155 14 H -0.264 1.264 15 H -0.267 1.267 16 H -0.240 1.240 17 N -0.568 5.568 18 H 0.412 0.588 19 H 0.061 0.939 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.158 0.842 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 6.263 14.361 15.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.200 4.200 4 C -0.165 4.165 5 C -0.164 4.164 6 N -0.202 5.202 7 C -0.146 4.146 8 S 0.247 5.753 9 C -0.659 4.659 10 H 0.138 0.862 11 C -0.113 4.113 12 N -0.505 5.505 13 Si 0.669 3.331 14 H -0.189 1.189 15 H -0.192 1.192 16 H -0.165 1.165 17 N -0.175 5.175 18 H 0.249 0.751 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.176 0.824 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.538 5.546 13.758 14.913 hybrid contribution 0.077 0.112 0.576 0.592 sum -1.461 5.659 14.333 15.479 Atomic orbital electron populations 1.21784 0.93822 1.02242 1.01886 1.19398 0.95922 0.94785 0.92984 1.21852 1.00987 0.95299 1.01840 1.21039 0.92603 1.04312 0.98571 1.22018 1.01416 1.03418 0.89574 1.70853 1.04358 1.13714 1.31280 1.25749 1.02112 1.03965 0.82778 1.82729 1.25042 1.54454 1.13092 1.22459 1.16452 1.36992 0.89989 0.86160 1.24677 0.97182 0.95211 0.94205 1.69923 1.39092 1.38852 1.02668 0.86970 0.83941 0.81835 0.80345 1.18932 1.19224 1.16478 1.43229 1.22619 1.40745 1.10945 0.75119 0.92006 0.92455 0.92347 0.91310 0.92550 0.92942 0.92102 0.82426 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.78 37.16 0.33 -1.11 15 2 C -0.01 -0.13 3.38 -91.77 -0.31 -0.44 15 3 C -0.14 -1.50 9.17 37.15 0.34 -1.16 15 4 C -0.05 -0.78 6.17 -81.38 -0.50 -1.28 15 5 C -0.01 -0.26 11.04 -17.84 -0.20 -0.45 15 6 N -0.48 -11.68 10.01 -13.39 -0.13 -11.81 15 7 C 0.22 5.11 8.25 -88.51 -0.73 4.38 15 8 S 0.01 0.36 19.86 -107.50 -2.13 -1.77 15 9 C -0.51 -14.98 9.90 30.88 0.31 -14.67 15 10 H 0.12 3.93 7.12 -52.49 -0.37 3.56 15 11 C 0.10 2.78 5.50 -17.48 -0.10 2.68 15 12 N -0.87 -26.21 13.97 55.48 0.78 -25.43 15 13 Si 0.84 20.21 27.73 -169.99 -4.71 15.49 15 14 H -0.26 -6.21 7.11 56.52 0.40 -5.81 15 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 16 H -0.24 -5.47 6.74 56.52 0.38 -5.09 15 17 N -0.57 -10.11 6.23 -8.93 -0.06 -10.17 15 18 H 0.41 5.89 8.96 -40.82 -0.37 5.52 15 19 H 0.06 0.63 7.30 -51.93 -0.38 0.26 15 20 H 0.06 0.47 8.14 -51.93 -0.42 0.05 15 21 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 15 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 26 H 0.16 2.63 7.37 -52.49 -0.39 2.24 15 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 LS Contribution 248.86 15.07 3.75 3.75 Total: -1.00 -32.33 248.86 -6.57 -38.90 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.20 Total: 3.09 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.86 Total: -12.05 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.59 Total: -47.41 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.71 Total: 15.49 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.13 Total: -1.77 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.33 -6.57 -38.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600584880.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.293 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds