Wall clock time and date at job start Sun Mar 29 2020 21:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.34711 * 126.50785 * 34.68879 * 4 2 1 6 6 N 1.34042 * 108.35392 * 179.83221 * 5 4 2 7 7 C 1.31393 * 109.29130 * 0.44329 * 6 5 4 8 8 S 1.76198 * 125.80832 * 179.71021 * 7 6 5 9 9 C 1.76195 * 100.00292 * 0.02562 * 8 7 6 10 10 H 1.08000 * 119.99688 * 0.02562 * 9 8 7 11 11 C 1.38647 * 120.00104 * 180.02562 * 9 8 7 12 12 N 1.31654 * 120.00188 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99940 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46755 * 90.00669 * 13 11 9 15 15 H 1.48507 * 109.47233 * 210.00156 * 13 11 9 16 16 H 1.48492 * 109.47219 * 330.00318 * 13 11 9 17 17 N 1.36252 * 108.37902 * 359.72566 * 7 6 5 18 18 H 0.96991 * 126.50213 * 180.02562 * 17 7 6 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.08001 * 125.82650 * 0.02562 * 5 4 2 27 27 H 0.96997 * 120.00367 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.4601 -0.7030 -2.4500 6 7 2.2104 -1.4491 -3.2729 7 6 3.2336 -1.9346 -2.6068 8 16 4.4905 -2.9792 -3.2654 9 6 3.9360 -3.1114 -4.9326 10 1 3.0369 -2.6009 -5.2447 11 6 4.6539 -3.8708 -5.8438 12 7 4.2398 -3.9692 -7.0897 13 14 6.2094 -4.7532 -5.3041 14 1 5.8638 -6.1136 -4.8193 15 1 7.1425 -4.8599 -6.4544 16 1 6.8583 -3.9876 -4.2097 17 7 3.1571 -1.4932 -1.3200 18 1 3.7792 -1.6935 -0.6034 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 0.5533 -0.1820 -2.7196 27 1 4.7423 -4.5002 -7.7272 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600584880.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:30 Heat of formation + Delta-G solvation = 12.091152 kcal Electronic energy + Delta-G solvation = -11593.684459 eV Core-core repulsion = 9476.982527 eV Total energy + Delta-G solvation = -2116.701932 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.71102 -36.37567 -34.71659 -33.35533 -29.52286 -27.95413 -27.88319 -23.79125 -22.79253 -21.13293 -20.08436 -18.37913 -17.13627 -16.47898 -16.06232 -15.29402 -15.05882 -14.90263 -14.62631 -13.83327 -13.56559 -13.16736 -13.06674 -12.92532 -12.34328 -12.07692 -11.96962 -11.87610 -11.29387 -11.13271 -10.97075 -10.69136 -10.19358 -8.55115 -8.49021 -6.26171 0.70053 1.02184 1.32294 1.38486 1.48624 2.16100 2.18570 2.28785 2.68246 2.87788 3.81089 3.99505 4.26794 4.29219 4.54586 4.58013 4.83656 4.88577 5.02937 5.16605 5.21269 5.41282 5.53219 5.77701 5.80735 6.37118 6.42806 6.88155 7.17415 8.64928 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.071709 B = 0.007394 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.371331 B = 3785.870278 C = 4020.322778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.010 4.010 3 C -0.139 4.139 4 C -0.004 4.004 5 C -0.051 4.051 6 N -0.529 5.529 7 C 0.185 3.815 8 S 0.042 5.958 9 C -0.538 4.538 10 H 0.068 0.932 11 C 0.041 3.959 12 N -0.918 5.918 13 Si 0.916 3.084 14 H -0.254 1.254 15 H -0.255 1.255 16 H -0.220 1.220 17 N -0.548 5.548 18 H 0.431 0.569 19 H 0.057 0.943 20 H 0.087 0.913 21 H 0.049 0.951 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.176 0.824 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 6.758 17.500 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 C -0.197 4.197 4 C -0.123 4.123 5 C -0.201 4.201 6 N -0.252 5.252 7 C -0.186 4.186 8 S 0.273 5.727 9 C -0.687 4.687 10 H 0.086 0.914 11 C -0.165 4.165 12 N -0.555 5.555 13 Si 0.736 3.264 14 H -0.178 1.178 15 H -0.179 1.179 16 H -0.143 1.143 17 N -0.157 5.157 18 H 0.271 0.729 19 H 0.076 0.924 20 H 0.106 0.894 21 H 0.068 0.932 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.193 0.807 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.779 6.057 16.931 17.999 hybrid contribution -0.369 0.123 -0.304 0.493 sum -1.147 6.180 16.627 17.776 Atomic orbital electron populations 1.21803 0.92402 1.02177 1.03277 1.19690 0.97000 0.95241 0.91077 1.21835 1.00678 0.94195 1.02993 1.21876 0.90209 1.00925 0.99328 1.22438 1.02614 1.04602 0.90433 1.70720 1.05662 1.14906 1.33922 1.25387 1.02531 1.05966 0.84715 1.81957 1.25857 1.55875 1.08983 1.22503 1.15402 1.37031 0.93738 0.91409 1.25743 1.01053 0.95713 0.93966 1.70053 1.41168 1.40004 1.04299 0.85896 0.78960 0.80714 0.80868 1.17768 1.17906 1.14323 1.43188 1.23046 1.39635 1.09842 0.72877 0.92355 0.89441 0.93181 0.88922 0.89437 0.93451 0.93020 0.80671 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.78 71.98 0.63 -1.73 15 2 C -0.01 -0.20 3.38 -11.54 -0.04 -0.24 15 3 C -0.14 -2.40 9.17 71.98 0.66 -1.74 15 4 C 0.00 -0.13 6.17 40.89 0.25 0.12 15 5 C -0.05 -1.99 11.04 83.55 0.92 -1.06 15 6 N -0.53 -26.55 10.01 -196.27 -1.97 -28.52 15 7 C 0.18 8.48 8.25 179.61 1.48 9.96 15 8 S 0.04 2.03 19.86 -56.49 -1.12 0.91 15 9 C -0.54 -32.91 9.90 67.92 0.67 -32.23 15 10 H 0.07 4.75 7.12 -2.91 -0.02 4.73 15 11 C 0.04 2.39 5.50 84.82 0.47 2.86 15 12 N -0.92 -57.37 13.97 21.62 0.30 -57.06 15 13 Si 0.92 41.66 27.73 68.60 1.90 43.56 15 14 H -0.25 -11.04 7.11 99.48 0.71 -10.33 15 15 H -0.26 -10.99 7.11 99.48 0.71 -10.29 15 16 H -0.22 -9.19 6.74 99.48 0.67 -8.52 15 17 N -0.55 -18.62 6.23 -182.16 -1.14 -19.75 15 18 H 0.43 11.14 8.96 -92.72 -0.83 10.31 15 19 H 0.06 1.04 7.30 -2.39 -0.02 1.02 15 20 H 0.09 1.01 8.14 -2.39 -0.02 0.99 15 21 H 0.05 0.95 8.14 -2.38 -0.02 0.93 15 22 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 15 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 15 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 15 26 H 0.18 5.84 7.37 -2.91 -0.02 5.82 15 27 H 0.28 15.87 8.31 -92.71 -0.77 15.10 15 Total: -1.00 -74.19 248.86 3.34 -70.86 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.31 Total: 14.06 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 5.05 Total: -24.06 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -2.80 Total: -105.33 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.90 Total: 43.56 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.12 Total: 0.91 kcal Total: -74.19 3.34 -70.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600584880.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.948 kcal (2) G-P(sol) polarization free energy of solvation -74.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds