Wall clock time and date at job start Sun Mar 29 2020 21:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46894 * 109.46920 * 2 1 4 4 C 1.46902 * 110.99606 * 198.72138 * 3 2 1 5 5 C 1.52996 * 109.47035 * 66.05023 * 4 3 2 6 6 H 1.09001 * 109.47190 * 304.99608 * 5 4 3 7 7 C 1.53004 * 109.47414 * 64.99734 * 5 4 3 8 8 C 1.53006 * 109.47328 * 184.99728 * 5 4 3 9 9 C 1.50691 * 109.47209 * 174.99635 * 8 5 4 10 10 H 1.08007 * 120.00229 * 0.02562 * 9 8 5 11 11 C 1.37884 * 120.00241 * 179.97438 * 9 8 5 12 12 N 1.31519 * 119.99308 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00388 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46975 * 60.00285 * 13 11 9 15 15 H 1.48499 * 109.47072 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47332 * 300.00541 * 13 11 9 17 17 C 1.46902 * 110.99973 * 74.77266 * 3 2 1 18 18 C 1.52995 * 117.50023 * 3.08165 * 17 3 2 19 19 C 1.52998 * 117.49757 * 294.45773 * 17 3 2 20 20 H 1.08993 * 109.46543 * 53.71521 * 1 2 3 21 21 H 1.08997 * 109.46795 * 173.71550 * 1 2 3 22 22 H 1.08998 * 109.46568 * 293.71551 * 1 2 3 23 23 H 1.09002 * 109.46612 * 239.99915 * 2 1 3 24 24 H 1.09001 * 109.46563 * 120.00287 * 2 1 3 25 25 H 1.08996 * 109.47492 * 306.04662 * 4 3 2 26 26 H 1.09006 * 109.47321 * 186.04731 * 4 3 2 27 27 H 1.09002 * 109.46894 * 60.00319 * 7 5 4 28 28 H 1.09004 * 109.46995 * 180.02562 * 7 5 4 29 29 H 1.08998 * 109.47038 * 300.00280 * 7 5 4 30 30 H 1.09003 * 109.46761 * 54.99893 * 8 5 4 31 31 H 1.08992 * 109.46936 * 295.00095 * 8 5 4 32 32 H 0.97003 * 119.99500 * 180.02562 * 12 11 9 33 33 H 1.09001 * 115.54757 * 148.79412 * 17 3 2 34 34 H 1.09004 * 117.49630 * 359.97438 * 18 17 3 35 35 H 1.09001 * 117.50120 * 145.02430 * 18 17 3 36 36 H 1.09002 * 117.50158 * 214.98364 * 19 17 3 37 37 H 1.09001 * 117.49840 * 359.97438 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4198 1.4483 -0.4402 5 6 3.5120 1.0296 -1.9089 6 1 3.0609 0.0455 -2.0352 7 6 2.7684 2.0468 -2.7769 8 6 4.9813 0.9753 -2.3325 9 6 5.0791 0.4455 -3.7398 10 1 4.1829 0.1750 -4.2785 11 6 6.3126 0.3070 -4.3402 12 7 7.4038 0.6369 -3.6843 13 14 6.4338 -0.3490 -6.0850 14 1 5.6862 0.5468 -7.0037 15 1 7.8597 -0.4007 -6.4964 16 1 5.8517 -1.7139 -6.1422 17 6 1.8556 2.0014 1.3233 18 6 1.3011 1.1241 2.4474 19 6 0.4281 2.2181 1.8295 20 1 -0.3632 0.6082 -0.8284 21 1 -0.3633 -1.0215 -0.1125 22 1 -0.3632 0.4133 0.9409 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 4.0229 0.7744 0.1683 26 1 3.7899 2.4675 -0.3290 27 1 3.2196 3.0310 -2.6506 28 1 2.8338 1.7482 -3.8232 29 1 1.7217 2.0855 -2.4752 30 1 5.5298 0.3179 -1.6578 31 1 5.4087 1.9770 -2.2908 32 1 8.2716 0.5398 -4.1068 33 1 2.6029 2.7487 1.5897 34 1 1.0577 0.0896 2.2050 35 1 1.6837 1.2940 3.4538 36 1 0.2364 3.1078 2.4293 37 1 -0.3892 1.9037 1.1804 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602440023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:22 Heat of formation + Delta-G solvation = 24.664864 kcal Electronic energy + Delta-G solvation = -14458.611014 eV Core-core repulsion = 12236.793548 eV Total energy + Delta-G solvation = -2221.817466 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.24025 -35.72991 -33.14016 -31.83994 -30.23823 -26.77122 -25.12386 -23.36741 -22.53558 -22.03070 -19.88650 -18.71109 -16.85407 -16.21240 -15.15771 -14.52393 -14.36537 -13.80102 -13.27503 -13.16459 -12.63753 -12.37000 -11.99814 -11.59787 -11.47174 -11.28490 -11.04722 -10.87941 -10.81514 -10.63828 -10.54943 -10.29178 -10.16157 -10.06650 -9.51753 -9.09197 -8.92130 -8.30122 -7.81494 -5.95374 -3.96387 3.36003 3.40251 3.42845 3.81944 4.22630 4.50522 4.92226 5.00594 5.11690 5.23405 5.40312 5.43665 5.60757 5.65987 5.73307 5.84174 5.90853 5.98013 6.00093 6.15406 6.21306 6.25330 6.41197 6.45183 6.60740 6.73922 7.05534 7.18856 7.24861 7.44571 7.49929 7.72035 7.88356 8.05024 8.49200 9.09772 9.66766 11.16188 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056682 B = 0.006271 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.864538 B = 4464.000191 C = 4638.843767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.038 3.962 3 N -0.502 5.502 4 C 0.061 3.939 5 C -0.082 4.082 6 H 0.056 0.944 7 C -0.122 4.122 8 C 0.027 3.973 9 C -0.512 4.512 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.027 3.973 18 C -0.225 4.225 19 C -0.185 4.185 20 H 0.063 0.937 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.039 0.961 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 0.972 9.529 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.090 4.090 3 N -0.224 5.224 4 C -0.066 4.066 5 C -0.100 4.100 6 H 0.075 0.925 7 C -0.180 4.180 8 C -0.010 4.010 9 C -0.551 4.551 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.718 3.282 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.083 4.083 18 C -0.264 4.264 19 C -0.222 4.222 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.023 1.248 9.146 15.158 hybrid contribution 0.729 -0.792 -0.334 1.127 sum -11.294 0.456 8.812 14.332 Atomic orbital electron populations 1.22245 0.95639 1.01274 1.02919 1.22306 0.95692 0.89432 1.01560 1.61956 1.21228 1.17268 1.21917 1.22344 0.85830 1.00877 0.97511 1.21265 0.99727 0.98032 0.91010 0.92534 1.21578 0.98377 0.98217 0.99789 1.19122 0.88826 0.97073 0.96001 1.21199 0.92211 1.42429 0.99224 0.92647 1.25021 0.95973 0.95774 0.97765 1.69962 0.97741 1.48778 1.37251 0.86691 0.76838 0.79497 0.85166 1.20267 1.21379 1.20332 1.22683 0.96934 1.00663 0.88026 1.23584 1.06667 0.97667 0.98492 1.23389 0.95382 0.99903 1.03561 0.91833 0.92953 0.91438 0.89862 0.94296 0.95200 0.91223 0.94198 0.92826 0.93948 0.96961 0.96570 0.93066 0.87047 0.87817 0.89384 0.89280 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.73 37.16 0.32 -1.63 16 2 C 0.04 0.54 5.12 -3.82 -0.02 0.52 16 3 N -0.50 -7.72 4.12 -226.65 -0.93 -8.65 16 4 C 0.06 1.09 4.30 -3.82 -0.02 1.08 16 5 C -0.08 -1.70 2.28 -90.62 -0.21 -1.90 16 6 H 0.06 1.19 6.09 -51.93 -0.32 0.88 16 7 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 8 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 9 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 10 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 13 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 C 0.03 0.36 6.11 -67.71 -0.41 -0.06 16 18 C -0.23 -2.56 9.02 -26.73 -0.24 -2.80 16 19 C -0.18 -2.07 9.55 -26.73 -0.26 -2.32 16 20 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.74 3.87 -51.93 -0.20 0.54 16 23 H 0.08 1.32 5.83 -51.93 -0.30 1.01 16 24 H 0.04 0.54 6.09 -51.93 -0.32 0.22 16 25 H 0.03 0.55 8.12 -51.93 -0.42 0.12 16 26 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.11 1.44 7.89 -51.93 -0.41 1.03 16 34 H 0.10 1.19 4.91 -51.93 -0.25 0.93 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.11 1.21 5.40 -51.93 -0.28 0.93 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -29.34 283.79 -8.09 -37.44 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.14 Total: -1.53 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -1.01 Total: -21.90 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.20 Total: -35.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.34 -8.09 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.104 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds