Wall clock time and date at job start Sun Mar 29 2020 21:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46894 * 109.46920 * 2 1 4 4 C 1.46902 * 110.99606 * 198.72138 * 3 2 1 5 5 C 1.52996 * 109.47035 * 66.05023 * 4 3 2 6 6 H 1.09001 * 109.47190 * 304.99608 * 5 4 3 7 7 C 1.53004 * 109.47414 * 64.99734 * 5 4 3 8 8 C 1.53006 * 109.47328 * 184.99728 * 5 4 3 9 9 C 1.50691 * 109.47209 * 174.99635 * 8 5 4 10 10 H 1.08007 * 120.00229 * 0.02562 * 9 8 5 11 11 C 1.37884 * 120.00241 * 179.97438 * 9 8 5 12 12 N 1.31519 * 119.99308 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00388 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46975 * 60.00285 * 13 11 9 15 15 H 1.48499 * 109.47072 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47332 * 300.00541 * 13 11 9 17 17 C 1.46902 * 110.99973 * 74.77266 * 3 2 1 18 18 C 1.52995 * 117.50023 * 3.08165 * 17 3 2 19 19 C 1.52998 * 117.49757 * 294.45773 * 17 3 2 20 20 H 1.08993 * 109.46543 * 53.71521 * 1 2 3 21 21 H 1.08997 * 109.46795 * 173.71550 * 1 2 3 22 22 H 1.08998 * 109.46568 * 293.71551 * 1 2 3 23 23 H 1.09002 * 109.46612 * 239.99915 * 2 1 3 24 24 H 1.09001 * 109.46563 * 120.00287 * 2 1 3 25 25 H 1.08996 * 109.47492 * 306.04662 * 4 3 2 26 26 H 1.09006 * 109.47321 * 186.04731 * 4 3 2 27 27 H 1.09002 * 109.46894 * 60.00319 * 7 5 4 28 28 H 1.09004 * 109.46995 * 180.02562 * 7 5 4 29 29 H 1.08998 * 109.47038 * 300.00280 * 7 5 4 30 30 H 1.09003 * 109.46761 * 54.99893 * 8 5 4 31 31 H 1.08992 * 109.46936 * 295.00095 * 8 5 4 32 32 H 0.97003 * 119.99500 * 180.02562 * 12 11 9 33 33 H 1.09001 * 115.54757 * 148.79412 * 17 3 2 34 34 H 1.09004 * 117.49630 * 359.97438 * 18 17 3 35 35 H 1.09001 * 117.50120 * 145.02430 * 18 17 3 36 36 H 1.09002 * 117.50158 * 214.98364 * 19 17 3 37 37 H 1.09001 * 117.49840 * 359.97438 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4198 1.4483 -0.4402 5 6 3.5120 1.0296 -1.9089 6 1 3.0609 0.0455 -2.0352 7 6 2.7684 2.0468 -2.7769 8 6 4.9813 0.9753 -2.3325 9 6 5.0791 0.4455 -3.7398 10 1 4.1829 0.1750 -4.2785 11 6 6.3126 0.3070 -4.3402 12 7 7.4038 0.6369 -3.6843 13 14 6.4338 -0.3490 -6.0850 14 1 5.6862 0.5468 -7.0037 15 1 7.8597 -0.4007 -6.4964 16 1 5.8517 -1.7139 -6.1422 17 6 1.8556 2.0014 1.3233 18 6 1.3011 1.1241 2.4474 19 6 0.4281 2.2181 1.8295 20 1 -0.3632 0.6082 -0.8284 21 1 -0.3633 -1.0215 -0.1125 22 1 -0.3632 0.4133 0.9409 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 4.0229 0.7744 0.1683 26 1 3.7899 2.4675 -0.3290 27 1 3.2196 3.0310 -2.6506 28 1 2.8338 1.7482 -3.8232 29 1 1.7217 2.0855 -2.4752 30 1 5.5298 0.3179 -1.6578 31 1 5.4087 1.9770 -2.2908 32 1 8.2716 0.5398 -4.1068 33 1 2.6029 2.7487 1.5897 34 1 1.0577 0.0896 2.2050 35 1 1.6837 1.2940 3.4538 36 1 0.2364 3.1078 2.4293 37 1 -0.3892 1.9037 1.1804 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602440023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:22 Heat of formation + Delta-G solvation = 7.848129 kcal Electronic energy + Delta-G solvation = -14459.340242 eV Core-core repulsion = 12236.793548 eV Total energy + Delta-G solvation = -2222.546694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.36832 -37.31604 -34.86828 -33.44212 -31.50490 -28.77863 -26.71400 -24.62725 -24.20912 -22.98042 -21.06156 -20.31616 -18.56385 -17.77062 -16.50753 -16.32130 -15.93099 -15.04135 -14.61121 -14.48770 -14.27544 -13.87177 -13.47280 -13.27446 -12.87448 -12.74231 -12.49242 -12.45367 -12.33195 -12.16180 -11.97951 -11.76536 -11.50855 -11.35156 -11.19356 -10.91224 -10.80329 -10.52082 -8.99644 -8.17186 -6.26470 1.40260 1.43186 1.50891 2.42163 2.76057 3.16088 3.18784 3.88174 4.04546 4.08182 4.17261 4.25412 4.36397 4.50743 4.50938 4.65242 4.75484 4.85116 4.86970 4.94647 4.97299 4.99683 5.10591 5.21360 5.28653 5.32785 5.45357 5.48584 5.50051 5.56283 5.80583 5.88872 6.16572 6.26190 6.33280 6.89068 7.41704 8.94805 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056682 B = 0.006271 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.864538 B = 4464.000191 C = 4638.843767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.034 3.966 3 N -0.504 5.504 4 C 0.073 3.927 5 C -0.072 4.072 6 H 0.054 0.946 7 C -0.111 4.111 8 C 0.033 3.967 9 C -0.530 4.530 10 H 0.060 0.940 11 C -0.002 4.002 12 N -0.936 5.936 13 Si 0.961 3.039 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.268 1.268 17 C -0.002 4.002 18 C -0.215 4.215 19 C -0.168 4.168 20 H 0.056 0.944 21 H 0.066 0.934 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.043 0.957 25 H 0.019 0.981 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.063 0.937 30 H -0.016 1.016 31 H -0.010 1.010 32 H 0.262 0.738 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.772 0.777 9.677 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.093 4.093 3 N -0.226 5.226 4 C -0.054 4.054 5 C -0.091 4.091 6 H 0.072 0.928 7 C -0.169 4.169 8 C -0.004 4.004 9 C -0.568 4.568 10 H 0.078 0.922 11 C -0.199 4.199 12 N -0.577 5.577 13 Si 0.786 3.214 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.192 1.192 17 C -0.112 4.112 18 C -0.254 4.254 19 C -0.206 4.206 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.003 0.997 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.866 1.053 9.305 16.732 hybrid contribution 1.294 -0.724 -0.311 1.515 sum -12.572 0.329 8.994 15.461 Atomic orbital electron populations 1.22184 0.93484 1.02232 1.03340 1.22368 0.97396 0.88749 1.00791 1.61948 1.18850 1.18029 1.23815 1.22041 0.87806 1.00240 0.95337 1.21060 0.96183 0.98527 0.93305 0.92754 1.21460 0.99414 0.97459 0.98522 1.19005 0.91870 0.94616 0.94940 1.21597 0.92565 1.42332 1.00267 0.92174 1.25957 0.95575 0.95976 1.02408 1.70101 0.98338 1.49929 1.39287 0.85556 0.77039 0.79212 0.79589 1.19218 1.20957 1.19249 1.22778 0.98814 1.01852 0.87708 1.23621 1.05814 0.97608 0.98320 1.23452 0.93844 1.00421 1.02847 0.92500 0.91532 0.90110 0.91890 0.93856 0.96303 0.91450 0.94519 0.94358 0.91771 0.99715 0.99134 0.92928 0.87149 0.87787 0.88095 0.87550 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.73 71.99 0.63 -2.72 16 2 C 0.03 0.94 5.12 86.31 0.44 1.38 16 3 N -0.50 -15.00 4.12 -870.98 -3.59 -18.59 16 4 C 0.07 2.65 4.30 86.30 0.37 3.02 16 5 C -0.07 -3.04 2.28 -10.79 -0.02 -3.07 16 6 H 0.05 2.32 6.09 -2.39 -0.01 2.31 16 7 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 8 C 0.03 1.79 4.45 29.85 0.13 1.92 16 9 C -0.53 -30.42 8.41 25.60 0.22 -30.21 16 10 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 11 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 12 N -0.94 -57.88 13.29 21.45 0.28 -57.60 16 13 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 C 0.00 -0.06 6.11 44.91 0.27 0.22 16 18 C -0.22 -4.32 9.02 30.59 0.28 -4.05 16 19 C -0.17 -3.26 9.55 30.59 0.29 -2.97 16 20 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.08 1.52 3.87 -2.39 -0.01 1.51 16 23 H 0.06 1.97 5.83 -2.39 -0.01 1.95 16 24 H 0.04 1.14 6.09 -2.39 -0.01 1.12 16 25 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 26 H 0.07 2.43 7.96 -2.38 -0.02 2.41 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.60 6.95 -2.39 -0.02 1.58 16 29 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 30 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.11 2.74 7.89 -2.39 -0.02 2.72 16 34 H 0.10 2.11 4.91 -2.39 -0.01 2.09 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 2.11 5.40 -2.39 -0.01 2.09 16 Total: -1.00 -63.04 283.79 3.45 -59.58 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.02 Total: 9.54 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 3.71 Total: -39.87 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -3.31 Total: -76.19 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -63.04 3.45 -59.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.431 kcal (2) G-P(sol) polarization free energy of solvation -63.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds