Wall clock time and date at job start Sun Mar 29 2020 21:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47250 * 2 1 4 4 C 1.46897 * 111.00403 * 285.17668 * 3 2 1 5 5 C 1.52997 * 109.47351 * 169.99787 * 4 3 2 6 6 H 1.08991 * 109.47205 * 55.00371 * 5 4 3 7 7 C 1.53004 * 109.47186 * 295.00083 * 5 4 3 8 8 C 1.52999 * 109.47043 * 175.00319 * 5 4 3 9 9 C 1.50707 * 109.47140 * 184.99965 * 8 5 4 10 10 H 1.07993 * 119.99810 * 0.02562 * 9 8 5 11 11 C 1.37876 * 120.00005 * 179.72203 * 9 8 5 12 12 N 1.31509 * 119.99870 * 180.27477 * 11 9 8 13 13 Si 1.86806 * 120.00086 * 0.27798 * 11 9 8 14 14 H 1.48501 * 109.46797 * 89.99653 * 13 11 9 15 15 H 1.48499 * 109.47099 * 209.99977 * 13 11 9 16 16 H 1.48505 * 109.46978 * 330.00141 * 13 11 9 17 17 C 1.46901 * 110.99905 * 161.22243 * 3 2 1 18 18 C 1.52998 * 117.49936 * 10.61434 * 17 3 2 19 19 C 1.52997 * 117.49831 * 301.95124 * 17 3 2 20 20 H 1.09006 * 109.47259 * 305.28679 * 1 2 3 21 21 H 1.09003 * 109.47290 * 65.28430 * 1 2 3 22 22 H 1.08997 * 109.47298 * 185.28681 * 1 2 3 23 23 H 1.09003 * 109.47177 * 240.00219 * 2 1 3 24 24 H 1.09003 * 109.47319 * 120.00289 * 2 1 3 25 25 H 1.09005 * 109.46883 * 49.99551 * 4 3 2 26 26 H 1.09000 * 109.47582 * 290.00463 * 4 3 2 27 27 H 1.08997 * 109.46869 * 300.00203 * 7 5 4 28 28 H 1.09001 * 109.47078 * 60.00107 * 7 5 4 29 29 H 1.08997 * 109.47112 * 179.97438 * 7 5 4 30 30 H 1.09002 * 109.47126 * 65.00181 * 8 5 4 31 31 H 1.09001 * 109.46980 * 304.99881 * 8 5 4 32 32 H 0.96999 * 119.99810 * 179.97438 * 12 11 9 33 33 H 1.09004 * 115.54961 * 156.28357 * 17 3 2 34 34 H 1.08996 * 117.49802 * 359.97438 * 18 17 3 35 35 H 1.09001 * 117.49902 * 145.02028 * 18 17 3 36 36 H 1.09007 * 117.49571 * 214.98187 * 19 17 3 37 37 H 1.08994 * 117.50111 * 359.97438 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8567 2.0011 -1.3235 5 6 2.1399 3.5014 -1.2261 6 1 3.1278 3.6573 -0.7929 7 6 1.0837 4.1633 -0.3387 8 6 2.0924 4.1212 -2.6241 9 6 2.4914 5.5723 -2.5441 10 1 2.7530 6.0087 -1.5915 11 6 2.5284 6.3412 -3.6880 12 7 2.8817 7.6060 -3.6189 13 14 2.0765 5.5863 -5.3359 14 1 0.6194 5.7489 -5.5719 15 1 2.8324 6.2685 -6.4168 16 1 2.4186 4.1412 -5.3288 17 6 3.4193 1.4484 0.4415 18 6 4.1798 0.1272 0.5710 19 6 3.7491 0.8892 1.8268 20 1 -0.3634 0.5937 0.8389 21 1 -0.3634 0.4297 -0.9335 22 1 -0.3634 -1.0233 0.0947 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 0.8360 1.8459 -1.6733 26 1 2.5545 1.5444 -2.0254 27 1 0.0957 4.0073 -0.7720 28 1 1.1174 3.7217 0.6573 29 1 1.2857 5.2321 -0.2690 30 1 1.0804 4.0440 -3.0216 31 1 2.7821 3.5905 -3.2804 32 1 2.9081 8.1469 -4.4237 33 1 3.9795 2.3207 0.1044 34 1 3.6415 -0.7891 0.3290 35 1 5.2404 0.1302 0.3195 36 1 4.5266 1.3932 2.4010 37 1 2.9276 0.4745 2.4109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602440032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:23 Heat of formation + Delta-G solvation = 15.783250 kcal Electronic energy + Delta-G solvation = -14493.887391 eV Core-core repulsion = 12271.684789 eV Total energy + Delta-G solvation = -2222.202602 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.08460 -35.58748 -33.69296 -32.11026 -29.76357 -27.32503 -25.39385 -23.11947 -22.44009 -22.13762 -19.87562 -18.54451 -16.85880 -16.21784 -15.65949 -14.49501 -14.18606 -14.02926 -13.44676 -13.04887 -12.73456 -12.50139 -12.07368 -11.92859 -11.58208 -11.50908 -11.24462 -10.98941 -10.92939 -10.74993 -10.50007 -10.38181 -10.16822 -9.70493 -9.62648 -9.35292 -9.01134 -8.49046 -7.89535 -5.99418 -3.96027 3.33069 3.40357 3.44048 3.79938 4.17056 4.49084 4.90771 5.02915 5.05152 5.10571 5.34261 5.34726 5.54623 5.62599 5.67853 5.77566 5.81672 5.87751 6.00778 6.09636 6.10640 6.16258 6.26871 6.35478 6.49037 6.66109 6.88652 7.09112 7.18755 7.29877 7.32664 7.43465 7.53528 7.86031 8.60716 9.06747 9.63705 11.14085 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038481 B = 0.007325 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.453228 B = 3821.400090 C = 4025.482605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 N -0.502 5.502 4 C 0.058 3.942 5 C -0.072 4.072 6 H 0.061 0.939 7 C -0.124 4.124 8 C -0.010 4.010 9 C -0.511 4.511 10 H 0.074 0.926 11 C 0.065 3.935 12 N -0.906 5.906 13 Si 0.877 3.123 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.267 1.267 17 C 0.029 3.971 18 C -0.226 4.226 19 C -0.175 4.175 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.033 0.967 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.011 0.989 31 H 0.012 0.988 32 H 0.262 0.738 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -15.382 7.249 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.224 5.224 4 C -0.069 4.069 5 C -0.091 4.091 6 H 0.080 0.920 7 C -0.181 4.181 8 C -0.048 4.048 9 C -0.549 4.549 10 H 0.092 0.908 11 C -0.136 4.136 12 N -0.545 5.545 13 Si 0.705 3.295 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.191 1.191 17 C -0.081 4.081 18 C -0.266 4.266 19 C -0.213 4.213 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.812 -14.951 7.458 16.806 hybrid contribution 0.310 -0.749 -1.549 1.749 sum -1.502 -15.700 5.908 16.842 Atomic orbital electron populations 1.21775 0.94997 1.00951 1.02716 1.22181 0.96041 0.89772 1.00363 1.61909 1.16107 1.16369 1.27996 1.22381 1.00692 0.96466 0.87354 1.21038 0.99072 0.90748 0.98204 0.92025 1.21585 0.97551 1.00804 0.98167 1.19626 0.96122 0.96828 0.92179 1.21139 1.45040 0.93056 0.95696 0.90814 1.25026 0.94901 0.94709 0.98957 1.69914 1.49054 1.06690 1.28846 0.86815 0.78686 0.79888 0.84095 1.20376 1.21513 1.19143 1.22770 0.89413 0.96659 0.99221 1.23572 1.01231 0.97633 1.04125 1.23030 1.02987 1.04103 0.91135 0.91787 0.92620 0.92816 0.94881 0.91035 0.91034 0.95203 0.94346 0.93626 0.92301 0.97106 0.97005 0.92865 0.85673 0.88744 0.89107 0.88696 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.93 37.15 0.37 -1.29 16 2 C 0.04 0.54 4.34 -3.83 -0.02 0.53 16 3 N -0.50 -7.38 4.11 -226.65 -0.93 -8.31 16 4 C 0.06 0.98 4.18 -3.83 -0.02 0.96 16 5 C -0.07 -1.44 2.29 -90.62 -0.21 -1.65 16 6 H 0.06 1.27 6.26 -51.93 -0.33 0.95 16 7 C -0.12 -2.42 8.89 37.16 0.33 -2.08 16 8 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 9 C -0.51 -14.57 8.96 -34.44 -0.31 -14.88 16 10 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 11 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 12 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 13 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 17 C 0.03 0.41 5.82 -67.71 -0.39 0.01 16 18 C -0.23 -2.66 9.56 -26.69 -0.26 -2.92 16 19 C -0.17 -2.05 9.91 -26.69 -0.26 -2.32 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.05 0.67 6.92 -51.93 -0.36 0.31 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.03 0.41 7.83 -51.93 -0.41 0.00 16 24 H 0.07 0.81 5.60 -51.93 -0.29 0.51 16 25 H 0.07 1.18 6.66 -51.93 -0.35 0.83 16 26 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.81 7.75 -51.93 -0.40 0.41 16 29 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 30 H 0.01 0.26 7.58 -51.93 -0.39 -0.14 16 31 H 0.01 0.28 7.19 -51.93 -0.37 -0.09 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.13 1.93 6.29 -51.93 -0.33 1.60 16 34 H 0.09 1.05 6.02 -51.93 -0.31 0.74 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.09 1.06 7.47 -51.93 -0.39 0.67 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -29.83 286.13 -7.85 -37.68 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.37 Total: -1.45 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -0.96 Total: -22.16 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.16 Total: -35.71 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.83 -7.85 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.459 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds