Wall clock time and date at job start Sun Mar 29 2020 21:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47250 * 2 1 4 4 C 1.46897 * 111.00403 * 285.17668 * 3 2 1 5 5 C 1.52997 * 109.47351 * 169.99787 * 4 3 2 6 6 H 1.08991 * 109.47205 * 55.00371 * 5 4 3 7 7 C 1.53004 * 109.47186 * 295.00083 * 5 4 3 8 8 C 1.52999 * 109.47043 * 175.00319 * 5 4 3 9 9 C 1.50707 * 109.47140 * 184.99965 * 8 5 4 10 10 H 1.07993 * 119.99810 * 0.02562 * 9 8 5 11 11 C 1.37876 * 120.00005 * 179.72203 * 9 8 5 12 12 N 1.31509 * 119.99870 * 180.27477 * 11 9 8 13 13 Si 1.86806 * 120.00086 * 0.27798 * 11 9 8 14 14 H 1.48501 * 109.46797 * 89.99653 * 13 11 9 15 15 H 1.48499 * 109.47099 * 209.99977 * 13 11 9 16 16 H 1.48505 * 109.46978 * 330.00141 * 13 11 9 17 17 C 1.46901 * 110.99905 * 161.22243 * 3 2 1 18 18 C 1.52998 * 117.49936 * 10.61434 * 17 3 2 19 19 C 1.52997 * 117.49831 * 301.95124 * 17 3 2 20 20 H 1.09006 * 109.47259 * 305.28679 * 1 2 3 21 21 H 1.09003 * 109.47290 * 65.28430 * 1 2 3 22 22 H 1.08997 * 109.47298 * 185.28681 * 1 2 3 23 23 H 1.09003 * 109.47177 * 240.00219 * 2 1 3 24 24 H 1.09003 * 109.47319 * 120.00289 * 2 1 3 25 25 H 1.09005 * 109.46883 * 49.99551 * 4 3 2 26 26 H 1.09000 * 109.47582 * 290.00463 * 4 3 2 27 27 H 1.08997 * 109.46869 * 300.00203 * 7 5 4 28 28 H 1.09001 * 109.47078 * 60.00107 * 7 5 4 29 29 H 1.08997 * 109.47112 * 179.97438 * 7 5 4 30 30 H 1.09002 * 109.47126 * 65.00181 * 8 5 4 31 31 H 1.09001 * 109.46980 * 304.99881 * 8 5 4 32 32 H 0.96999 * 119.99810 * 179.97438 * 12 11 9 33 33 H 1.09004 * 115.54961 * 156.28357 * 17 3 2 34 34 H 1.08996 * 117.49802 * 359.97438 * 18 17 3 35 35 H 1.09001 * 117.49902 * 145.02028 * 18 17 3 36 36 H 1.09007 * 117.49571 * 214.98187 * 19 17 3 37 37 H 1.08994 * 117.50111 * 359.97438 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8567 2.0011 -1.3235 5 6 2.1399 3.5014 -1.2261 6 1 3.1278 3.6573 -0.7929 7 6 1.0837 4.1633 -0.3387 8 6 2.0924 4.1212 -2.6241 9 6 2.4914 5.5723 -2.5441 10 1 2.7530 6.0087 -1.5915 11 6 2.5284 6.3412 -3.6880 12 7 2.8817 7.6060 -3.6189 13 14 2.0765 5.5863 -5.3359 14 1 0.6194 5.7489 -5.5719 15 1 2.8324 6.2685 -6.4168 16 1 2.4186 4.1412 -5.3288 17 6 3.4193 1.4484 0.4415 18 6 4.1798 0.1272 0.5710 19 6 3.7491 0.8892 1.8268 20 1 -0.3634 0.5937 0.8389 21 1 -0.3634 0.4297 -0.9335 22 1 -0.3634 -1.0233 0.0947 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 0.8360 1.8459 -1.6733 26 1 2.5545 1.5444 -2.0254 27 1 0.0957 4.0073 -0.7720 28 1 1.1174 3.7217 0.6573 29 1 1.2857 5.2321 -0.2690 30 1 1.0804 4.0440 -3.0216 31 1 2.7821 3.5905 -3.2804 32 1 2.9081 8.1469 -4.4237 33 1 3.9795 2.3207 0.1044 34 1 3.6415 -0.7891 0.3290 35 1 5.2404 0.1302 0.3195 36 1 4.5266 1.3932 2.4010 37 1 2.9276 0.4745 2.4109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602440032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:23 Heat of formation + Delta-G solvation = -2.052426 kcal Electronic energy + Delta-G solvation = -14494.660804 eV Core-core repulsion = 12271.684789 eV Total energy + Delta-G solvation = -2222.976015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19506 -37.12569 -35.03373 -34.03959 -31.02369 -29.18129 -26.82836 -24.44611 -23.93496 -23.07810 -21.31356 -19.91974 -18.92321 -17.37702 -16.90095 -16.14902 -15.79903 -15.29531 -14.97206 -14.49400 -14.16042 -13.94536 -13.52560 -13.21023 -13.11656 -12.80823 -12.60106 -12.47769 -12.20441 -12.08720 -11.94209 -11.70789 -11.65648 -11.26798 -11.22908 -11.12673 -10.92226 -10.73435 -8.99365 -8.26061 -6.28356 1.35404 1.36978 1.48807 2.37511 2.75687 3.09026 3.14752 3.86255 3.99173 4.08805 4.15251 4.26478 4.28619 4.48718 4.56095 4.67273 4.71940 4.78047 4.83262 4.91497 4.98842 5.02727 5.10598 5.12250 5.16178 5.26301 5.39908 5.40375 5.43190 5.55982 5.70381 5.73794 6.19196 6.25575 6.36105 6.79171 7.35091 8.90799 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038481 B = 0.007325 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.453228 B = 3821.400090 C = 4025.482605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 N -0.508 5.508 4 C 0.071 3.929 5 C -0.067 4.067 6 H 0.048 0.952 7 C -0.113 4.113 8 C -0.006 4.006 9 C -0.518 4.518 10 H 0.034 0.966 11 C 0.001 3.999 12 N -0.954 5.954 13 Si 0.948 3.052 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.248 1.248 17 C -0.002 4.002 18 C -0.211 4.211 19 C -0.162 4.162 20 H 0.057 0.943 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.036 0.964 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.027 0.973 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.264 0.736 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -18.149 7.018 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 N -0.230 5.230 4 C -0.057 4.057 5 C -0.086 4.086 6 H 0.066 0.934 7 C -0.170 4.170 8 C -0.044 4.044 9 C -0.556 4.556 10 H 0.052 0.948 11 C -0.195 4.195 12 N -0.595 5.595 13 Si 0.771 3.229 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.172 1.172 17 C -0.111 4.111 18 C -0.250 4.250 19 C -0.199 4.199 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.094 0.906 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.513 -17.739 7.248 19.327 hybrid contribution 0.576 0.152 -1.367 1.491 sum -1.937 -17.588 5.881 18.646 Atomic orbital electron populations 1.21764 0.94210 1.02224 1.01950 1.22278 0.96647 0.88298 1.01149 1.61891 1.16720 1.18049 1.26309 1.22098 1.00911 0.93860 0.88795 1.20903 0.98639 0.93278 0.95791 0.93357 1.21462 0.97670 0.98714 0.99184 1.19565 0.96028 0.94035 0.94740 1.21445 1.44492 0.95510 0.94199 0.94810 1.25998 0.94916 0.95085 1.03470 1.70072 1.50776 1.08471 1.30189 0.85696 0.78829 0.79810 0.78539 1.19205 1.21108 1.17167 1.22738 0.89420 0.97373 1.01586 1.23605 1.01354 0.96674 1.03386 1.23091 1.03193 1.03188 0.90463 0.92412 0.93480 0.90572 0.94616 0.89592 0.90323 0.95490 0.93632 0.91917 0.95520 0.96449 0.96835 0.92675 0.87954 0.87619 0.88546 0.87929 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.93 71.98 0.71 -2.12 16 2 C 0.04 0.94 4.34 86.30 0.37 1.31 16 3 N -0.51 -13.97 4.11 -870.99 -3.58 -17.56 16 4 C 0.07 2.28 4.18 86.30 0.36 2.64 16 5 C -0.07 -2.69 2.29 -10.79 -0.02 -2.72 16 6 H 0.05 2.05 6.26 -2.39 -0.01 2.03 16 7 C -0.11 -4.42 8.89 71.98 0.64 -3.78 16 8 C -0.01 -0.28 3.52 29.85 0.10 -0.17 16 9 C -0.52 -30.36 8.96 25.60 0.23 -30.13 16 10 H 0.03 2.18 7.30 -2.91 -0.02 2.16 16 11 C 0.00 0.08 5.47 84.66 0.46 0.54 16 12 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 13 Si 0.95 45.12 27.47 68.60 1.88 47.00 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 17 C 0.00 -0.05 5.82 44.91 0.26 0.21 16 18 C -0.21 -4.43 9.56 30.62 0.29 -4.14 16 19 C -0.16 -3.42 9.91 30.62 0.30 -3.12 16 20 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 21 H 0.05 1.00 6.92 -2.39 -0.02 0.99 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.04 0.77 7.83 -2.39 -0.02 0.75 16 24 H 0.09 1.63 5.60 -2.39 -0.01 1.61 16 25 H 0.08 2.42 6.66 -2.38 -0.02 2.40 16 26 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 29 H 0.03 1.18 6.95 -2.39 -0.02 1.16 16 30 H 0.02 0.80 7.58 -2.39 -0.02 0.78 16 31 H 0.01 0.63 7.19 -2.39 -0.02 0.62 16 32 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.10 3.18 6.29 -2.38 -0.02 3.17 16 34 H 0.11 1.99 6.02 -2.39 -0.01 1.98 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.10 1.99 7.47 -2.39 -0.02 1.97 16 Total: -1.00 -64.85 286.13 3.28 -61.57 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.96 Total: 11.11 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.72 Total: -41.47 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -3.28 Total: -78.22 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -64.85 3.28 -61.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.520 kcal (2) G-P(sol) polarization free energy of solvation -64.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds