Wall clock time and date at job start Sun Mar 29 2020 21:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47163 * 2 1 4 4 C 1.36938 * 119.99640 * 269.43299 * 3 2 1 5 5 H 1.08002 * 120.00279 * 326.02465 * 4 3 2 6 6 C 1.38813 * 119.99948 * 146.03355 * 4 3 2 7 7 N 1.31622 * 119.99865 * 336.62783 * 6 4 3 8 8 Si 1.86803 * 120.00009 * 156.62996 * 6 4 3 9 9 H 1.48494 * 109.47101 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47085 * 120.00027 * 8 6 4 11 11 H 1.48497 * 109.46836 * 239.99748 * 8 6 4 12 12 C 1.46499 * 119.99874 * 89.43090 * 3 2 1 13 13 C 1.50700 * 109.47132 * 90.00201 * 12 3 2 14 14 C 1.35139 * 127.24789 * 89.70199 * 13 12 3 15 15 C 1.37813 * 114.75893 * 179.86382 * 14 13 12 16 16 N 1.30082 * 116.88130 * 0.45297 * 15 14 13 17 17 S 1.69607 * 107.14945 * 359.75760 * 16 15 14 18 18 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47574 * 300.00557 * 1 2 3 20 20 H 1.09009 * 109.47176 * 60.00278 * 1 2 3 21 21 H 1.09003 * 109.47251 * 239.99746 * 2 1 3 22 22 H 1.08999 * 109.47132 * 119.99930 * 2 1 3 23 23 H 0.97000 * 119.99579 * 180.02562 * 7 6 4 24 24 H 1.09000 * 109.46641 * 209.99847 * 12 3 2 25 25 H 1.08994 * 109.47342 * 329.99391 * 12 3 2 26 26 H 1.08001 * 122.62266 * 0.04536 * 14 13 12 27 27 H 1.08000 * 121.56257 * 180.20845 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2576 2.0228 -1.1859 5 1 2.6244 1.4670 -2.0362 6 6 2.0288 3.3876 -1.2952 7 7 1.1844 3.9808 -0.4782 8 14 2.9194 4.3822 -2.6017 9 1 3.8076 3.4869 -3.3856 10 1 1.9254 5.0114 -3.5080 11 1 3.7335 5.4392 -1.9497 12 6 2.2506 2.0760 1.2687 13 6 3.6697 1.8407 1.7178 14 6 4.7564 2.5864 1.4192 15 6 5.9354 2.1360 1.9728 16 7 5.8703 1.0587 2.6990 17 16 4.2487 0.5618 2.7124 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.0243 4.9344 -0.5548 24 1 2.0848 3.1448 1.1332 25 1 1.5626 1.6945 2.0231 26 1 4.7046 3.4682 0.7977 27 1 6.8703 2.6511 1.8082 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602450063.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:16 Heat of formation + Delta-G solvation = 54.048068 kcal Electronic energy + Delta-G solvation = -12165.911368 eV Core-core repulsion = 10051.028825 eV Total energy + Delta-G solvation = -2114.882544 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.07517 -36.06189 -31.96170 -31.37158 -28.71797 -26.37363 -23.97386 -22.86025 -20.54497 -18.94287 -17.40654 -16.42850 -15.05250 -14.75163 -14.28173 -13.85757 -13.25787 -12.85892 -12.50770 -12.32901 -11.63057 -11.52067 -11.29470 -11.00496 -10.76087 -10.43042 -10.21673 -9.95138 -9.93104 -9.77283 -8.73272 -8.63314 -8.08204 -6.85299 -5.98337 -3.48016 1.44265 2.26065 2.56645 3.19526 3.27109 3.36691 3.40057 4.36651 5.14375 5.37517 5.45918 5.86656 6.01912 6.06735 6.22912 6.38123 6.42870 6.58067 6.66902 6.83991 6.88493 7.15845 7.26674 7.38863 7.68292 8.31169 8.97541 9.61441 10.16854 11.03332 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.013507 C = 0.009971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.793211 B = 2072.484161 C = 2807.358616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 N -0.570 5.570 4 C -0.254 4.254 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.881 5.881 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.285 1.285 12 C 0.199 3.801 13 C -0.123 4.123 14 C -0.225 4.225 15 C 0.093 3.907 16 N -0.490 5.490 17 S 0.189 5.811 18 H 0.034 0.966 19 H 0.044 0.956 20 H 0.056 0.944 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.258 0.742 24 H 0.123 0.877 25 H 0.044 0.956 26 H 0.149 0.851 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 -2.910 3.541 5.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 N -0.289 5.289 4 C -0.384 4.384 5 H 0.083 0.917 6 C -0.189 4.189 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.212 1.212 12 C 0.070 3.930 13 C -0.257 4.257 14 C -0.260 4.260 15 C -0.105 4.105 16 N -0.311 5.311 17 S 0.338 5.662 18 H 0.053 0.947 19 H 0.063 0.937 20 H 0.075 0.925 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.140 0.860 25 H 0.063 0.937 26 H 0.167 0.833 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.065 -4.542 4.793 7.280 hybrid contribution 0.544 2.221 -1.845 2.938 sum 3.610 -2.321 2.948 5.207 Atomic orbital electron populations 1.22238 0.99051 0.98722 1.02084 1.20939 0.92349 0.86730 0.98657 1.43855 1.72901 1.10484 1.01658 1.19147 1.37559 0.91498 0.90182 0.91711 1.25088 0.97075 0.98476 0.98261 1.69955 1.32030 1.10559 1.39732 0.86338 0.79714 0.80168 0.81350 1.19967 1.21487 1.21158 1.19730 0.83431 1.03255 0.86573 1.27314 1.04697 0.96529 0.97113 1.21232 0.91026 1.05950 1.07770 1.22773 0.99902 0.93223 0.94575 1.76682 1.11542 1.17131 1.25750 1.83721 1.02064 1.32226 1.48153 0.94721 0.93661 0.92475 0.93598 0.94618 0.93223 0.85969 0.93732 0.83311 0.81202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.24 37.15 0.38 -2.69 15 2 C 0.14 2.84 6.39 -4.04 -0.03 2.82 15 3 N -0.57 -13.43 2.43 -174.61 -0.43 -13.86 15 4 C -0.25 -6.56 9.48 -15.06 -0.14 -6.70 15 5 H 0.07 1.70 7.93 -52.49 -0.42 1.28 15 6 C 0.01 0.30 4.94 -17.43 -0.09 0.21 15 7 N -0.88 -23.57 11.34 55.49 0.63 -22.94 15 8 Si 0.90 20.45 29.61 -169.99 -5.03 15.42 15 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 12 C 0.20 4.45 5.87 -5.19 -0.03 4.42 15 13 C -0.12 -2.51 6.18 -35.41 -0.22 -2.73 15 14 C -0.23 -4.40 10.17 -40.84 -0.42 -4.81 15 15 C 0.09 1.63 11.27 -18.45 -0.21 1.42 15 16 N -0.49 -9.26 12.09 28.86 0.35 -8.91 15 17 S 0.19 3.49 23.72 -107.50 -2.55 0.94 15 18 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 19 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.06 1.19 8.14 -51.92 -0.42 0.77 15 21 H 0.05 0.93 8.04 -51.93 -0.42 0.51 15 22 H 0.04 0.67 8.08 -51.93 -0.42 0.25 15 23 H 0.26 6.65 8.31 -40.82 -0.34 6.31 15 24 H 0.12 3.05 5.33 -51.93 -0.28 2.77 15 25 H 0.04 0.94 8.07 -51.93 -0.42 0.52 15 26 H 0.15 2.93 8.06 -52.49 -0.42 2.50 15 27 H 0.17 2.35 8.06 -52.49 -0.42 1.92 15 LS Contribution 251.35 15.07 3.79 3.79 Total: -1.00 -27.23 251.35 -7.19 -34.41 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.20 Total: -0.78 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.75 Total: -8.07 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.55 Total: -45.71 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.55 Total: 0.94 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.23 -7.19 -34.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450063.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.461 kcal (2) G-P(sol) polarization free energy of solvation -27.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds