Wall clock time and date at job start Sun Mar 29 2020 21:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47163 * 2 1 4 4 C 1.36938 * 119.99640 * 269.43299 * 3 2 1 5 5 H 1.08002 * 120.00279 * 326.02465 * 4 3 2 6 6 C 1.38813 * 119.99948 * 146.03355 * 4 3 2 7 7 N 1.31622 * 119.99865 * 336.62783 * 6 4 3 8 8 Si 1.86803 * 120.00009 * 156.62996 * 6 4 3 9 9 H 1.48494 * 109.47101 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47085 * 120.00027 * 8 6 4 11 11 H 1.48497 * 109.46836 * 239.99748 * 8 6 4 12 12 C 1.46499 * 119.99874 * 89.43090 * 3 2 1 13 13 C 1.50700 * 109.47132 * 90.00201 * 12 3 2 14 14 C 1.35139 * 127.24789 * 89.70199 * 13 12 3 15 15 C 1.37813 * 114.75893 * 179.86382 * 14 13 12 16 16 N 1.30082 * 116.88130 * 0.45297 * 15 14 13 17 17 S 1.69607 * 107.14945 * 359.75760 * 16 15 14 18 18 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47574 * 300.00557 * 1 2 3 20 20 H 1.09009 * 109.47176 * 60.00278 * 1 2 3 21 21 H 1.09003 * 109.47251 * 239.99746 * 2 1 3 22 22 H 1.08999 * 109.47132 * 119.99930 * 2 1 3 23 23 H 0.97000 * 119.99579 * 180.02562 * 7 6 4 24 24 H 1.09000 * 109.46641 * 209.99847 * 12 3 2 25 25 H 1.08994 * 109.47342 * 329.99391 * 12 3 2 26 26 H 1.08001 * 122.62266 * 0.04536 * 14 13 12 27 27 H 1.08000 * 121.56257 * 180.20845 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2576 2.0228 -1.1859 5 1 2.6244 1.4670 -2.0362 6 6 2.0288 3.3876 -1.2952 7 7 1.1844 3.9808 -0.4782 8 14 2.9194 4.3822 -2.6017 9 1 3.8076 3.4869 -3.3856 10 1 1.9254 5.0114 -3.5080 11 1 3.7335 5.4392 -1.9497 12 6 2.2506 2.0760 1.2687 13 6 3.6697 1.8407 1.7178 14 6 4.7564 2.5864 1.4192 15 6 5.9354 2.1360 1.9728 16 7 5.8703 1.0587 2.6990 17 16 4.2487 0.5618 2.7124 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.0243 4.9344 -0.5548 24 1 2.0848 3.1448 1.1332 25 1 1.5626 1.6945 2.0231 26 1 4.7046 3.4682 0.7977 27 1 6.8703 2.6511 1.8082 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602450063.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:16 Heat of formation + Delta-G solvation = 39.200048 kcal Electronic energy + Delta-G solvation = -12166.555227 eV Core-core repulsion = 10051.028825 eV Total energy + Delta-G solvation = -2115.526402 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.59492 -37.79160 -33.82885 -32.96350 -30.40517 -28.10546 -25.71414 -24.42553 -22.23359 -20.50837 -19.12887 -18.08787 -16.82396 -16.33982 -15.98762 -15.63488 -14.80583 -14.47404 -14.11419 -13.93715 -13.26106 -13.19691 -13.04440 -12.75298 -12.42491 -12.26382 -11.98386 -11.62425 -11.58536 -11.30475 -10.59511 -10.25589 -9.54313 -8.72394 -7.90703 -5.44827 -0.07242 0.73395 1.09328 1.44672 1.50317 1.58906 1.72372 2.49991 3.20427 3.69396 3.96751 4.36558 4.41462 4.52268 4.63322 4.81263 4.84308 5.05714 5.11995 5.26702 5.27892 5.49446 5.58964 5.71361 5.80183 6.40523 7.08104 7.76040 8.28042 9.08590 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.013507 C = 0.009971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.793211 B = 2072.484161 C = 2807.358616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 N -0.585 5.585 4 C -0.264 4.264 5 H 0.055 0.945 6 C -0.026 4.026 7 N -0.908 5.908 8 Si 0.949 3.051 9 H -0.273 1.273 10 H -0.292 1.292 11 H -0.282 1.282 12 C 0.206 3.794 13 C -0.146 4.146 14 C -0.228 4.228 15 C 0.102 3.898 16 N -0.501 5.501 17 S 0.220 5.780 18 H 0.069 0.931 19 H 0.037 0.963 20 H 0.030 0.970 21 H 0.045 0.955 22 H 0.053 0.947 23 H 0.255 0.745 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.144 0.856 27 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 -3.512 3.909 6.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 N -0.305 5.305 4 C -0.394 4.394 5 H 0.073 0.927 6 C -0.224 4.224 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.219 1.219 11 H -0.209 1.209 12 C 0.077 3.923 13 C -0.279 4.279 14 C -0.263 4.263 15 C -0.095 4.095 16 N -0.321 5.321 17 S 0.370 5.630 18 H 0.088 0.912 19 H 0.056 0.944 20 H 0.050 0.950 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.161 0.839 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.231 -5.169 5.173 8.448 hybrid contribution 0.221 2.349 -1.882 3.018 sum 4.453 -2.820 3.290 6.213 Atomic orbital electron populations 1.22106 0.98072 1.00440 1.00372 1.21075 0.93120 0.85482 0.99418 1.44011 1.73816 1.11337 1.01360 1.19233 1.37391 0.91892 0.90933 0.92712 1.25625 0.97646 0.99142 0.99998 1.70056 1.33305 1.10459 1.41285 0.85507 0.78557 0.78858 0.79336 1.19767 1.21912 1.20859 1.19444 0.84855 1.01597 0.86386 1.27072 1.03990 0.98236 0.98638 1.21407 0.91656 1.05714 1.07507 1.23160 1.00658 0.92599 0.93106 1.76702 1.11595 1.17669 1.26141 1.83553 1.01702 1.30750 1.47029 0.91248 0.94380 0.95050 0.93647 0.92901 0.93512 0.88709 0.93155 0.83870 0.77277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 10.24 71.98 0.74 -4.85 15 2 C 0.13 5.36 6.39 86.38 0.55 5.91 15 3 N -0.59 -27.52 2.43 -706.35 -1.72 -29.24 15 4 C -0.26 -13.72 9.48 84.03 0.80 -12.92 15 5 H 0.06 2.90 7.93 -2.91 -0.02 2.88 15 6 C -0.03 -1.35 4.94 84.86 0.42 -0.93 15 7 N -0.91 -49.32 11.34 21.65 0.25 -49.07 15 8 Si 0.95 42.19 29.61 68.60 2.03 44.22 15 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 10 H -0.29 -13.08 7.11 99.48 0.71 -12.38 15 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 12 C 0.21 9.19 5.87 85.63 0.50 9.69 15 13 C -0.15 -5.82 6.18 24.97 0.15 -5.66 15 14 C -0.23 -8.53 10.17 21.45 0.22 -8.31 15 15 C 0.10 3.28 11.27 84.85 0.96 4.24 15 16 N -0.50 -17.46 12.09 -62.60 -0.76 -18.22 15 17 S 0.22 7.65 23.72 -56.49 -1.34 6.31 15 18 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 19 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 20 H 0.03 1.30 8.14 -2.38 -0.02 1.28 15 21 H 0.05 1.79 8.04 -2.39 -0.02 1.78 15 22 H 0.05 1.90 8.08 -2.39 -0.02 1.88 15 23 H 0.26 13.40 8.31 -92.71 -0.77 12.63 15 24 H 0.10 4.82 5.33 -2.39 -0.01 4.81 15 25 H 0.05 2.11 8.07 -2.39 -0.02 2.09 15 26 H 0.14 5.50 8.06 -2.91 -0.02 5.48 15 27 H 0.21 4.91 8.06 -2.91 -0.02 4.89 15 Total: -1.00 -56.81 251.35 3.95 -52.86 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.15 Total: 5.98 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 4.34 Total: -12.84 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -2.23 Total: -96.53 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -1.34 Total: 6.31 kcal Total: -56.81 3.95 -52.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450063.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.062 kcal (2) G-P(sol) polarization free energy of solvation -56.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds