Wall clock time and date at job start Sun Mar 29 2020 21:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47434 * 2 1 4 4 C 1.53003 * 109.46940 * 239.99594 * 2 1 3 5 5 C 1.50709 * 109.46927 * 65.00211 * 4 2 1 6 6 H 1.07997 * 119.99555 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00236 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00185 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99877 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47077 * 89.99488 * 9 7 5 11 11 H 1.48496 * 109.46962 * 209.99555 * 9 7 5 12 12 H 1.48502 * 109.46833 * 329.99350 * 9 7 5 13 13 C 1.52996 * 109.47115 * 120.00402 * 2 1 3 14 14 N 1.46907 * 109.47057 * 295.77459 * 13 2 1 15 15 C 1.48059 * 111.16361 * 176.93115 * 14 13 2 16 16 C 1.53991 * 107.14232 * 145.63276 * 15 14 13 17 17 C 1.54591 * 105.14084 * 358.91439 * 16 15 14 18 18 H 1.09002 * 110.87786 * 96.47341 * 17 16 15 19 19 C 1.52998 * 110.72797 * 219.68493 * 17 16 15 20 20 C 1.48540 * 110.99673 * 294.32747 * 14 13 2 21 21 H 1.08996 * 109.46849 * 64.83361 * 1 2 3 22 22 H 1.08997 * 109.46984 * 184.83587 * 1 2 3 23 23 H 1.08999 * 109.46911 * 304.83326 * 1 2 3 24 24 H 1.09000 * 109.47405 * 184.99817 * 4 2 1 25 25 H 1.08996 * 109.47374 * 305.00484 * 4 2 1 26 26 H 0.97003 * 120.00368 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47136 * 175.77639 * 13 2 1 28 28 H 1.08996 * 109.47713 * 55.77583 * 13 2 1 29 29 H 1.08999 * 109.76150 * 26.32074 * 15 14 13 30 30 H 1.08998 * 110.15999 * 265.16949 * 15 14 13 31 31 H 1.09006 * 110.30997 * 239.99678 * 16 15 14 32 32 H 1.09001 * 110.39325 * 117.87400 * 16 15 14 33 33 H 1.09002 * 109.47392 * 173.50300 * 19 17 16 34 34 H 1.09003 * 109.46860 * 293.50223 * 19 17 16 35 35 H 1.09003 * 109.47202 * 53.49793 * 19 17 16 36 36 H 1.08993 * 110.66517 * 81.84586 * 20 14 13 37 37 H 1.09000 * 110.66604 * 318.87796 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9931 -0.4018 -3.7283 8 7 1.6448 0.2772 -4.7994 9 14 2.9634 -1.9885 -3.9028 10 1 2.0241 -3.1328 -4.0200 11 1 3.8123 -1.9183 -5.1192 12 1 3.8251 -2.1757 -2.7080 13 6 2.0400 -0.7213 1.2492 14 7 1.6354 0.0275 2.4465 15 6 2.0471 -0.6768 3.6820 16 6 2.4081 0.4015 4.7204 17 6 2.2033 1.7490 3.9910 18 1 1.2212 2.1661 4.2141 19 6 3.3076 2.7401 4.3641 20 6 2.3041 1.3530 2.4965 21 1 -0.3633 0.4370 -0.9301 22 1 -0.3633 -1.0240 0.0866 23 1 -0.3633 0.5870 0.8435 24 1 3.1263 -0.7996 -1.2057 25 1 1.6053 -1.7198 -1.2951 26 1 1.8926 -0.0454 -5.6800 27 1 3.1274 -0.7873 1.2121 28 1 1.6162 -1.7248 1.2878 29 1 2.9167 -1.3015 3.4778 30 1 1.2279 -1.2916 4.0547 31 1 3.4472 0.2940 5.0319 32 1 1.7462 0.3341 5.5838 33 1 3.2108 3.6385 3.7545 34 1 3.2177 3.0045 5.4178 35 1 4.2811 2.2833 4.1860 36 1 1.7770 2.0735 1.8712 37 1 3.3468 1.2696 2.1901 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602450122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:52 Heat of formation + Delta-G solvation = -21.753900 kcal Electronic energy + Delta-G solvation = -14396.685249 eV Core-core repulsion = 12172.854914 eV Total energy + Delta-G solvation = -2223.830335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.07647 -35.59812 -32.87670 -31.69833 -29.41880 -27.38999 -26.49615 -24.69367 -22.39013 -20.73598 -20.17570 -18.77654 -16.75295 -16.05099 -15.18501 -14.59390 -14.08364 -13.80480 -13.42829 -13.23173 -12.82499 -12.60077 -12.28117 -12.11942 -11.70152 -11.54069 -11.23089 -10.92160 -10.87493 -10.68359 -10.64281 -10.50591 -10.35501 -9.70226 -9.67678 -9.35911 -9.01873 -8.48889 -8.11854 -5.99271 -3.95869 3.33306 3.40473 3.44292 4.22457 4.49293 4.63242 4.72182 4.92362 5.23649 5.34333 5.43182 5.47988 5.56309 5.66367 5.72530 5.76201 5.82936 5.87819 6.00650 6.07663 6.10025 6.22249 6.29787 6.35966 6.45683 6.64455 6.88441 7.05117 7.14160 7.24207 7.32858 7.41032 7.53208 7.86082 8.60812 9.06639 9.63840 11.14213 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047709 B = 0.006508 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.746173 B = 4301.385990 C = 4407.608144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 H 0.061 0.939 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.050 3.950 14 N -0.514 5.514 15 C 0.034 3.966 16 C -0.126 4.126 17 C -0.098 4.098 18 H 0.081 0.919 19 C -0.143 4.143 20 C 0.040 3.960 21 H 0.060 0.940 22 H 0.038 0.962 23 H 0.043 0.957 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.262 0.738 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 0.317 17.895 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.048 4.048 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.078 4.078 14 N -0.238 5.238 15 C -0.094 4.094 16 C -0.164 4.164 17 C -0.117 4.117 18 H 0.099 0.901 19 C -0.200 4.200 20 C -0.088 4.088 21 H 0.079 0.921 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.817 0.345 17.663 17.760 hybrid contribution 1.447 -1.055 -0.301 1.816 sum 3.264 -0.710 17.362 17.680 Atomic orbital electron populations 1.21595 0.95291 1.00364 1.00904 1.21000 0.96331 0.99108 0.92597 0.92100 1.19624 0.95655 0.95923 0.93584 1.21134 1.35153 1.09549 0.89077 0.90816 1.25023 0.95688 0.96914 0.95954 1.69914 1.47260 1.39360 0.97978 0.86810 0.80657 0.84442 0.77542 1.20350 1.21505 1.19181 1.22516 0.97285 0.97639 0.90317 1.64768 1.54666 1.02844 1.01494 1.22854 0.99136 0.96409 0.91030 1.22467 1.01146 0.94651 0.98113 1.22079 0.99533 0.94977 0.95093 0.90093 1.21774 0.98097 0.99108 1.01046 1.23285 0.97416 0.92299 0.95780 0.92062 0.94325 0.93835 0.97031 0.97080 0.92860 0.95365 0.91344 0.94247 0.90773 0.91777 0.91411 0.92358 0.92740 0.92801 0.89849 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.90 37.16 0.33 -2.13 16 2 C -0.07 -1.46 2.28 -90.62 -0.21 -1.67 16 3 H 0.06 1.28 6.90 -51.93 -0.36 0.92 16 4 C -0.01 -0.24 3.52 -27.88 -0.10 -0.34 16 5 C -0.51 -14.66 8.89 -34.44 -0.31 -14.97 16 6 H 0.07 2.27 7.32 -52.49 -0.38 1.88 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 9 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 13 C 0.05 0.87 4.10 -3.82 -0.02 0.85 16 14 N -0.51 -7.82 4.81 -230.31 -1.11 -8.93 16 15 C 0.03 0.43 6.71 -2.67 -0.02 0.41 16 16 C -0.13 -1.33 6.51 -25.38 -0.17 -1.49 16 17 C -0.10 -1.09 3.66 -88.76 -0.32 -1.42 16 18 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.14 -1.35 9.17 37.16 0.34 -1.01 16 20 C 0.04 0.56 5.08 -1.89 -0.01 0.55 16 21 H 0.06 1.34 6.82 -51.93 -0.35 0.99 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 24 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.03 0.49 7.99 -51.93 -0.41 0.08 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.49 7.77 -51.93 -0.40 0.09 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.62 7.80 -51.93 -0.41 0.22 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.51 8.07 -51.93 -0.42 0.09 16 36 H 0.08 1.24 7.60 -51.93 -0.39 0.84 16 37 H 0.04 0.63 7.82 -51.93 -0.41 0.22 16 LS Contribution 287.32 15.07 4.33 4.33 Total: -1.00 -30.17 287.32 -8.09 -38.25 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -6.84 Total: -4.21 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.57 Total: -19.41 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.33 Total: -36.40 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.17 -8.09 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.499 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds