Wall clock time and date at job start Sun Mar 29 2020 21:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47434 * 2 1 4 4 C 1.53003 * 109.46940 * 239.99594 * 2 1 3 5 5 C 1.50709 * 109.46927 * 65.00211 * 4 2 1 6 6 H 1.07997 * 119.99555 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00236 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00185 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99877 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47077 * 89.99488 * 9 7 5 11 11 H 1.48496 * 109.46962 * 209.99555 * 9 7 5 12 12 H 1.48502 * 109.46833 * 329.99350 * 9 7 5 13 13 C 1.52996 * 109.47115 * 120.00402 * 2 1 3 14 14 N 1.46907 * 109.47057 * 295.77459 * 13 2 1 15 15 C 1.48059 * 111.16361 * 176.93115 * 14 13 2 16 16 C 1.53991 * 107.14232 * 145.63276 * 15 14 13 17 17 C 1.54591 * 105.14084 * 358.91439 * 16 15 14 18 18 H 1.09002 * 110.87786 * 96.47341 * 17 16 15 19 19 C 1.52998 * 110.72797 * 219.68493 * 17 16 15 20 20 C 1.48540 * 110.99673 * 294.32747 * 14 13 2 21 21 H 1.08996 * 109.46849 * 64.83361 * 1 2 3 22 22 H 1.08997 * 109.46984 * 184.83587 * 1 2 3 23 23 H 1.08999 * 109.46911 * 304.83326 * 1 2 3 24 24 H 1.09000 * 109.47405 * 184.99817 * 4 2 1 25 25 H 1.08996 * 109.47374 * 305.00484 * 4 2 1 26 26 H 0.97003 * 120.00368 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47136 * 175.77639 * 13 2 1 28 28 H 1.08996 * 109.47713 * 55.77583 * 13 2 1 29 29 H 1.08999 * 109.76150 * 26.32074 * 15 14 13 30 30 H 1.08998 * 110.15999 * 265.16949 * 15 14 13 31 31 H 1.09006 * 110.30997 * 239.99678 * 16 15 14 32 32 H 1.09001 * 110.39325 * 117.87400 * 16 15 14 33 33 H 1.09002 * 109.47392 * 173.50300 * 19 17 16 34 34 H 1.09003 * 109.46860 * 293.50223 * 19 17 16 35 35 H 1.09003 * 109.47202 * 53.49793 * 19 17 16 36 36 H 1.08993 * 110.66517 * 81.84586 * 20 14 13 37 37 H 1.09000 * 110.66604 * 318.87796 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9931 -0.4018 -3.7283 8 7 1.6448 0.2772 -4.7994 9 14 2.9634 -1.9885 -3.9028 10 1 2.0241 -3.1328 -4.0200 11 1 3.8123 -1.9183 -5.1192 12 1 3.8251 -2.1757 -2.7080 13 6 2.0400 -0.7213 1.2492 14 7 1.6354 0.0275 2.4465 15 6 2.0471 -0.6768 3.6820 16 6 2.4081 0.4015 4.7204 17 6 2.2033 1.7490 3.9910 18 1 1.2212 2.1661 4.2141 19 6 3.3076 2.7401 4.3641 20 6 2.3041 1.3530 2.4965 21 1 -0.3633 0.4370 -0.9301 22 1 -0.3633 -1.0240 0.0866 23 1 -0.3633 0.5870 0.8435 24 1 3.1263 -0.7996 -1.2057 25 1 1.6053 -1.7198 -1.2951 26 1 1.8926 -0.0454 -5.6800 27 1 3.1274 -0.7873 1.2121 28 1 1.6162 -1.7248 1.2878 29 1 2.9167 -1.3015 3.4778 30 1 1.2279 -1.2916 4.0547 31 1 3.4472 0.2940 5.0319 32 1 1.7462 0.3341 5.5838 33 1 3.2108 3.6385 3.7545 34 1 3.2177 3.0045 5.4178 35 1 4.2811 2.2833 4.1860 36 1 1.7770 2.0735 1.8712 37 1 3.3468 1.2696 2.1901 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602450122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:52 Heat of formation + Delta-G solvation = -40.426858 kcal Electronic energy + Delta-G solvation = -14397.494969 eV Core-core repulsion = 12172.854914 eV Total energy + Delta-G solvation = -2224.640055 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.18702 -37.17318 -34.66802 -33.23800 -30.54908 -29.22514 -27.69259 -26.04903 -24.09685 -21.97840 -21.16139 -20.35334 -18.93083 -17.10044 -16.60696 -15.96468 -15.88103 -15.19200 -14.91603 -14.49108 -14.17667 -13.83771 -13.59347 -13.53882 -13.21951 -12.83301 -12.73063 -12.56099 -12.34338 -12.13386 -11.74522 -11.71496 -11.59480 -11.38504 -11.34914 -11.18561 -11.01674 -10.74414 -9.30158 -8.26792 -6.29267 1.35014 1.36504 1.48370 2.36933 3.07994 3.08632 3.70049 3.76462 4.02405 4.13347 4.29545 4.35047 4.46901 4.53048 4.64281 4.74163 4.78333 4.84297 4.87512 4.89658 4.94910 5.04712 5.06322 5.11460 5.25226 5.31764 5.37815 5.39967 5.46333 5.53751 5.67550 5.71365 6.05229 6.13366 6.34639 6.77850 7.34175 8.90037 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047709 B = 0.006508 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.746173 B = 4301.385990 C = 4407.608144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.067 4.067 3 H 0.046 0.954 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.034 0.966 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.249 1.249 13 C 0.062 3.938 14 N -0.525 5.525 15 C 0.030 3.970 16 C -0.119 4.119 17 C -0.093 4.093 18 H 0.081 0.919 19 C -0.139 4.139 20 C 0.035 3.965 21 H 0.028 0.972 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.013 0.987 25 H 0.018 0.982 26 H 0.265 0.735 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -1.134 20.165 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 H 0.065 0.935 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.052 0.948 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.173 1.173 13 C -0.066 4.066 14 N -0.248 5.248 15 C -0.097 4.097 16 C -0.157 4.157 17 C -0.112 4.112 18 H 0.099 0.901 19 C -0.197 4.197 20 C -0.093 4.093 21 H 0.047 0.953 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.032 0.968 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.719 -1.101 19.962 20.176 hybrid contribution 1.101 -0.504 -1.007 1.576 sum 3.820 -1.605 18.954 19.402 Atomic orbital electron populations 1.21476 0.94962 1.00858 0.99854 1.20867 0.96538 0.98322 0.92874 0.93525 1.19566 0.95724 0.95821 0.93319 1.21427 1.34369 1.08675 0.91226 0.94803 1.25993 0.96980 1.00969 0.95469 1.70070 1.49025 1.41655 0.98705 0.85688 0.79360 0.79569 0.78202 1.19166 1.21036 1.17261 1.22264 0.97067 0.97567 0.89746 1.64713 1.55111 1.03295 1.01724 1.22957 0.99570 0.97001 0.90194 1.22462 1.02315 0.93075 0.97855 1.22060 1.00261 0.95945 0.92899 0.90064 1.21750 0.97352 0.98476 1.02091 1.23314 0.96545 0.91613 0.97789 0.95253 0.93421 0.92180 0.96820 0.96410 0.92638 0.95399 0.90647 0.94054 0.89937 0.90610 0.89702 0.92638 0.90957 0.92795 0.91571 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.53 8.90 71.98 0.64 -3.89 16 2 C -0.07 -2.73 2.28 -10.79 -0.02 -2.76 16 3 H 0.05 2.01 6.90 -2.39 -0.02 1.99 16 4 C -0.01 -0.31 3.52 29.85 0.10 -0.20 16 5 C -0.52 -30.53 8.89 25.60 0.23 -30.30 16 6 H 0.03 2.20 7.32 -2.91 -0.02 2.17 16 7 C 0.00 0.12 5.47 84.65 0.46 0.58 16 8 N -0.95 -60.99 13.96 21.44 0.30 -60.69 16 9 Si 0.95 45.24 27.47 68.60 1.88 47.12 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 13 C 0.06 2.04 4.10 86.30 0.35 2.39 16 14 N -0.52 -15.04 4.81 -882.57 -4.24 -19.28 16 15 C 0.03 0.68 6.71 86.41 0.58 1.26 16 16 C -0.12 -2.13 6.51 31.47 0.20 -1.92 16 17 C -0.09 -1.87 3.66 -9.59 -0.04 -1.90 16 18 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 19 C -0.14 -2.32 9.17 71.98 0.66 -1.66 16 20 C 0.04 0.96 5.08 86.65 0.44 1.40 16 21 H 0.03 1.32 6.82 -2.39 -0.02 1.30 16 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.06 2.15 7.87 -2.39 -0.02 2.13 16 24 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 25 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 26 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.03 0.92 7.99 -2.39 -0.02 0.90 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 29 H 0.04 0.92 7.77 -2.39 -0.02 0.90 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.20 7.80 -2.38 -0.02 1.18 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.90 8.07 -2.39 -0.02 0.88 16 36 H 0.07 1.98 7.60 -2.39 -0.02 1.97 16 37 H 0.04 1.03 7.82 -2.39 -0.02 1.01 16 Total: -1.00 -65.38 287.32 2.49 -62.89 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.94 Total: 6.96 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.62 Total: -37.00 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -3.94 Total: -79.97 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -65.38 2.49 -62.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.463 kcal (2) G-P(sol) polarization free energy of solvation -65.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds