Wall clock time and date at job start Sun Mar 29 2020 21:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46609 * 2 1 4 4 C 1.53001 * 109.46662 * 120.00369 * 2 1 3 5 5 C 1.50695 * 109.46917 * 294.99692 * 4 2 1 6 6 H 1.07999 * 120.00224 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99823 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99851 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00214 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47003 * 60.00068 * 9 7 5 11 11 H 1.48499 * 109.47340 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47168 * 300.00289 * 9 7 5 13 13 C 1.52998 * 109.46978 * 240.00439 * 2 1 3 14 14 N 1.46903 * 109.46975 * 174.66538 * 13 2 1 15 15 C 1.48555 * 111.00070 * 284.43979 * 14 13 2 16 16 C 1.54377 * 104.59515 * 200.95475 * 15 14 13 17 17 C 1.54262 * 105.05989 * 23.85933 * 16 15 14 18 18 H 1.09001 * 110.32186 * 240.99947 * 17 16 15 19 19 C 1.52993 * 110.32878 * 118.89158 * 17 16 15 20 20 C 1.48562 * 111.00020 * 169.02003 * 14 13 2 21 21 H 1.09003 * 109.47147 * 185.21208 * 1 2 3 22 22 H 1.08999 * 109.47224 * 305.21493 * 1 2 3 23 23 H 1.09010 * 109.46659 * 65.21686 * 1 2 3 24 24 H 1.08998 * 109.46950 * 55.00349 * 4 2 1 25 25 H 1.09003 * 109.46731 * 175.00269 * 4 2 1 26 26 H 0.97002 * 120.00155 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.47729 * 54.66540 * 13 2 1 28 28 H 1.09003 * 109.47165 * 294.66183 * 13 2 1 29 29 H 1.09005 * 110.40976 * 82.17985 * 15 14 13 30 30 H 1.09000 * 110.41538 * 319.73897 * 15 14 13 31 31 H 1.08997 * 110.32974 * 264.95831 * 16 15 14 32 32 H 1.09002 * 110.31888 * 142.74634 * 16 15 14 33 33 H 1.09006 * 109.47488 * 61.45025 * 19 17 16 34 34 H 1.09006 * 109.47080 * 301.45531 * 19 17 16 35 35 H 1.08998 * 109.47713 * 181.45426 * 19 17 16 36 36 H 1.08994 * 110.41067 * 40.26427 * 20 14 13 37 37 H 1.09002 * 110.41325 * 277.82228 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9931 -0.4019 3.7282 8 7 2.6771 -1.5185 3.8510 9 14 1.4984 0.5624 5.2497 10 1 0.0183 0.6679 5.3092 11 1 1.9934 -0.1377 6.4621 12 1 2.0895 1.9232 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 3.5034 -0.6106 -1.3154 15 6 3.9156 0.7489 -1.7499 16 6 5.3526 0.5676 -2.2841 17 6 5.4468 -0.9192 -2.6844 18 1 6.2200 -1.4199 -2.1017 19 6 5.7419 -1.0493 -4.1800 20 6 4.0588 -1.5112 -2.3583 21 1 -0.3633 -1.0234 0.0934 22 1 -0.3633 0.5926 0.8396 23 1 -0.3633 0.4308 -0.9331 24 1 1.6053 -1.7199 1.2950 25 1 3.1263 -0.7995 1.2056 26 1 2.9249 -1.8411 4.7316 27 1 1.6008 -0.2655 -2.1367 28 1 1.7569 -1.7727 -1.2029 29 1 3.9083 1.4367 -0.9043 30 1 3.2587 1.1106 -2.5410 31 1 6.0783 0.7962 -1.5037 32 1 5.5165 1.2047 -3.1532 33 1 6.7009 -0.5816 -4.4032 34 1 4.9552 -0.5549 -4.7499 35 1 5.7799 -2.1040 -4.4525 36 1 3.4244 -1.5031 -3.2446 37 1 4.1593 -2.5250 -1.9709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602450124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:55 Heat of formation + Delta-G solvation = -22.590895 kcal Electronic energy + Delta-G solvation = -14459.944792 eV Core-core repulsion = 12236.078162 eV Total energy + Delta-G solvation = -2223.866629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.90938 -35.46352 -32.72443 -31.50717 -29.29564 -26.98190 -26.30516 -24.24236 -22.71924 -20.96012 -19.99100 -18.49432 -16.28206 -15.88615 -15.17447 -14.50881 -14.09108 -13.76949 -13.05058 -13.00227 -12.78986 -12.24615 -12.18633 -11.87188 -11.71813 -11.26371 -11.00883 -10.83249 -10.77202 -10.66844 -10.59170 -10.35154 -10.27736 -10.02212 -9.58377 -9.00604 -8.80845 -8.20197 -7.89043 -5.84259 -3.84697 3.40633 3.44950 3.47264 4.40499 4.57236 4.77533 4.88347 5.10996 5.41116 5.48988 5.50901 5.58684 5.64370 5.75617 5.81918 5.92599 5.96815 5.97983 6.11211 6.13451 6.29874 6.32457 6.36356 6.40790 6.47095 6.58043 7.02121 7.08629 7.32225 7.38046 7.60352 7.89520 8.12234 8.26090 8.61960 9.23175 9.77104 11.26970 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040978 B = 0.006994 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.134056 B = 4002.756109 C = 4266.480028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.054 3.946 14 N -0.496 5.496 15 C 0.034 3.966 16 C -0.120 4.120 17 C -0.098 4.098 18 H 0.078 0.922 19 C -0.142 4.142 20 C 0.035 3.965 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.027 0.973 24 H 0.008 0.992 25 H 0.033 0.967 26 H 0.258 0.742 27 H 0.019 0.981 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.036 0.964 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 1.970 -14.030 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.714 3.286 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.074 4.074 14 N -0.219 5.219 15 C -0.094 4.094 16 C -0.158 4.158 17 C -0.117 4.117 18 H 0.097 0.903 19 C -0.199 4.199 20 C -0.093 4.093 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.046 0.954 24 H 0.027 0.973 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.542 1.713 -13.355 13.923 hybrid contribution -0.655 0.653 0.159 0.938 sum 2.887 2.365 -13.196 13.714 Atomic orbital electron populations 1.21706 0.96542 1.01182 0.99536 1.21177 0.94097 0.99212 0.95577 0.92746 1.19046 0.97425 0.94424 0.89251 1.21288 1.34287 1.08142 0.91425 0.93086 1.24992 0.95514 0.95092 0.98849 1.69971 1.39160 1.21265 1.23159 0.86769 0.78752 0.80192 0.82891 1.20460 1.21446 1.20430 1.22424 0.86541 1.00891 0.97555 1.65363 1.11178 1.03656 1.41745 1.23105 0.94841 0.92656 0.98786 1.22384 0.97378 0.95697 1.00347 1.21872 0.97635 0.96299 0.95916 0.90332 1.21854 1.01150 1.01463 0.95476 1.23176 0.94445 0.98168 0.93495 0.93532 0.92049 0.95417 0.97339 0.94901 0.93236 0.96246 0.91498 0.89866 0.94689 0.91087 0.91826 0.92710 0.92974 0.92748 0.94542 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.92 37.16 0.33 -2.23 16 2 C -0.08 -1.74 2.40 -90.62 -0.22 -1.96 16 3 H 0.05 1.18 7.32 -51.93 -0.38 0.80 16 4 C 0.04 0.95 4.39 -27.89 -0.12 0.82 16 5 C -0.51 -14.80 8.47 -34.44 -0.29 -15.09 16 6 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.05 0.99 4.22 -3.82 -0.02 0.97 16 14 N -0.50 -8.86 4.72 -229.97 -1.08 -9.94 16 15 C 0.03 0.53 5.94 -2.19 -0.01 0.52 16 16 C -0.12 -1.56 6.65 -25.35 -0.17 -1.73 16 17 C -0.10 -1.24 3.65 -89.24 -0.33 -1.57 16 18 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.14 -1.42 8.91 37.15 0.33 -1.09 16 20 C 0.04 0.52 5.99 -2.18 -0.01 0.51 16 21 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.06 1.26 7.11 -51.93 -0.37 0.89 16 23 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.03 0.95 7.63 -51.93 -0.40 0.55 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.02 0.32 7.74 -51.93 -0.40 -0.08 16 28 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.08 1.41 7.75 -51.93 -0.40 1.00 16 30 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.71 7.71 -51.93 -0.40 0.30 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.50 7.70 -51.93 -0.40 0.10 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -30.70 291.27 -8.46 -39.16 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -6.88 Total: -4.50 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -0.60 Total: -19.30 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.35 Total: -36.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.70 -8.46 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.572 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds