Wall clock time and date at job start Sun Mar 29 2020 21:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46609 * 2 1 4 4 C 1.53001 * 109.46662 * 120.00369 * 2 1 3 5 5 C 1.50695 * 109.46917 * 294.99692 * 4 2 1 6 6 H 1.07999 * 120.00224 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99823 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99851 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00214 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47003 * 60.00068 * 9 7 5 11 11 H 1.48499 * 109.47340 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47168 * 300.00289 * 9 7 5 13 13 C 1.52998 * 109.46978 * 240.00439 * 2 1 3 14 14 N 1.46903 * 109.46975 * 174.66538 * 13 2 1 15 15 C 1.48555 * 111.00070 * 284.43979 * 14 13 2 16 16 C 1.54377 * 104.59515 * 200.95475 * 15 14 13 17 17 C 1.54262 * 105.05989 * 23.85933 * 16 15 14 18 18 H 1.09001 * 110.32186 * 240.99947 * 17 16 15 19 19 C 1.52993 * 110.32878 * 118.89158 * 17 16 15 20 20 C 1.48562 * 111.00020 * 169.02003 * 14 13 2 21 21 H 1.09003 * 109.47147 * 185.21208 * 1 2 3 22 22 H 1.08999 * 109.47224 * 305.21493 * 1 2 3 23 23 H 1.09010 * 109.46659 * 65.21686 * 1 2 3 24 24 H 1.08998 * 109.46950 * 55.00349 * 4 2 1 25 25 H 1.09003 * 109.46731 * 175.00269 * 4 2 1 26 26 H 0.97002 * 120.00155 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.47729 * 54.66540 * 13 2 1 28 28 H 1.09003 * 109.47165 * 294.66183 * 13 2 1 29 29 H 1.09005 * 110.40976 * 82.17985 * 15 14 13 30 30 H 1.09000 * 110.41538 * 319.73897 * 15 14 13 31 31 H 1.08997 * 110.32974 * 264.95831 * 16 15 14 32 32 H 1.09002 * 110.31888 * 142.74634 * 16 15 14 33 33 H 1.09006 * 109.47488 * 61.45025 * 19 17 16 34 34 H 1.09006 * 109.47080 * 301.45531 * 19 17 16 35 35 H 1.08998 * 109.47713 * 181.45426 * 19 17 16 36 36 H 1.08994 * 110.41067 * 40.26427 * 20 14 13 37 37 H 1.09002 * 110.41325 * 277.82228 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9931 -0.4019 3.7282 8 7 2.6771 -1.5185 3.8510 9 14 1.4984 0.5624 5.2497 10 1 0.0183 0.6679 5.3092 11 1 1.9934 -0.1377 6.4621 12 1 2.0895 1.9232 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 3.5034 -0.6106 -1.3154 15 6 3.9156 0.7489 -1.7499 16 6 5.3526 0.5676 -2.2841 17 6 5.4468 -0.9192 -2.6844 18 1 6.2200 -1.4199 -2.1017 19 6 5.7419 -1.0493 -4.1800 20 6 4.0588 -1.5112 -2.3583 21 1 -0.3633 -1.0234 0.0934 22 1 -0.3633 0.5926 0.8396 23 1 -0.3633 0.4308 -0.9331 24 1 1.6053 -1.7199 1.2950 25 1 3.1263 -0.7995 1.2056 26 1 2.9249 -1.8411 4.7316 27 1 1.6008 -0.2655 -2.1367 28 1 1.7569 -1.7727 -1.2029 29 1 3.9083 1.4367 -0.9043 30 1 3.2587 1.1106 -2.5410 31 1 6.0783 0.7962 -1.5037 32 1 5.5165 1.2047 -3.1532 33 1 6.7009 -0.5816 -4.4032 34 1 4.9552 -0.5549 -4.7499 35 1 5.7799 -2.1040 -4.4525 36 1 3.4244 -1.5031 -3.2446 37 1 4.1593 -2.5250 -1.9709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602450124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:55 Heat of formation + Delta-G solvation = -41.242533 kcal Electronic energy + Delta-G solvation = -14460.753587 eV Core-core repulsion = 12236.078162 eV Total energy + Delta-G solvation = -2224.675425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.14809 -37.11075 -34.61482 -33.06194 -30.44563 -29.02149 -27.55130 -25.62877 -24.61709 -22.29787 -21.19027 -20.06148 -18.47415 -17.06901 -16.57637 -16.48730 -15.41034 -15.23575 -14.55549 -14.37181 -14.07705 -13.83877 -13.40519 -13.34309 -13.07706 -12.95737 -12.75160 -12.57515 -12.35068 -12.18173 -11.98990 -11.64305 -11.61275 -11.42515 -11.33179 -10.93526 -10.87183 -10.46904 -9.21660 -8.11264 -6.20398 1.39867 1.43184 1.50674 2.44873 3.16509 3.21316 3.70680 3.79022 4.06649 4.18281 4.32571 4.35462 4.54942 4.56331 4.64518 4.68028 4.78446 4.81006 4.84869 4.90238 4.95207 5.05117 5.15919 5.24796 5.29168 5.31976 5.43540 5.46920 5.49761 5.65322 5.92553 6.01718 6.09519 6.27302 6.37681 6.97889 7.46807 9.00397 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040978 B = 0.006994 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.134056 B = 4002.756109 C = 4266.480028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.049 0.951 4 C 0.047 3.953 5 C -0.530 4.530 6 H 0.057 0.943 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.063 3.937 14 N -0.533 5.533 15 C 0.033 3.967 16 C -0.115 4.115 17 C -0.096 4.096 18 H 0.070 0.930 19 C -0.134 4.134 20 C 0.035 3.965 21 H 0.041 0.959 22 H 0.045 0.955 23 H 0.064 0.936 24 H -0.023 1.023 25 H -0.002 1.002 26 H 0.260 0.740 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 3.159 -15.332 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.067 0.933 4 C 0.010 3.990 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.194 1.194 13 C -0.065 4.065 14 N -0.257 5.257 15 C -0.095 4.095 16 C -0.153 4.153 17 C -0.115 4.115 18 H 0.088 0.912 19 C -0.192 4.192 20 C -0.093 4.093 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.083 0.917 24 H -0.005 1.005 25 H 0.017 0.983 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.196 2.911 -14.674 15.297 hybrid contribution -0.527 0.255 0.562 0.811 sum 2.669 3.166 -14.112 14.707 Atomic orbital electron populations 1.21626 0.94871 1.00995 1.00886 1.21030 0.95496 0.98370 0.94550 0.93270 1.18839 0.95072 0.93322 0.91763 1.21705 1.34156 1.08461 0.92510 0.92497 1.25942 0.95385 0.96108 1.02549 1.70125 1.40404 1.23083 1.24056 0.85603 0.78904 0.78771 0.78360 1.19193 1.21051 1.19382 1.22231 0.87403 1.00084 0.96817 1.65273 1.10865 1.05511 1.44059 1.23109 0.96803 0.91165 0.98397 1.22381 0.95401 0.96506 1.01023 1.21871 0.96066 0.95611 0.97931 0.91166 1.21796 1.02069 1.02279 0.93033 1.23216 0.95804 0.97132 0.93102 0.93954 0.93562 0.91661 1.00461 0.98321 0.93143 0.93559 0.92315 0.92154 0.93114 0.91961 0.89154 0.91319 0.92338 0.92041 0.92929 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.92 71.98 0.64 -4.13 16 2 C -0.08 -3.23 2.40 -10.79 -0.03 -3.25 16 3 H 0.05 2.14 7.32 -2.39 -0.02 2.12 16 4 C 0.05 2.61 4.39 29.85 0.13 2.74 16 5 C -0.53 -31.16 8.47 25.60 0.22 -30.94 16 6 H 0.06 3.20 7.06 -2.91 -0.02 3.18 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -59.47 13.29 21.45 0.28 -59.18 16 9 Si 0.96 45.85 29.54 68.60 2.03 47.88 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.06 2.26 4.22 86.30 0.36 2.63 16 14 N -0.53 -19.00 4.72 -881.50 -4.16 -23.16 16 15 C 0.03 1.00 5.94 86.45 0.51 1.52 16 16 C -0.12 -2.82 6.65 31.49 0.21 -2.61 16 17 C -0.10 -2.27 3.65 -9.90 -0.04 -2.31 16 18 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 19 C -0.13 -2.29 8.91 71.98 0.64 -1.65 16 20 C 0.04 1.00 5.99 86.45 0.52 1.52 16 21 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.05 1.86 7.11 -2.39 -0.02 1.84 16 23 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 24 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 25 H 0.00 -0.10 7.63 -2.39 -0.02 -0.12 16 26 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.05 1.42 7.74 -2.39 -0.02 1.40 16 28 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 29 H 0.06 2.06 7.75 -2.38 -0.02 2.05 16 30 H 0.05 1.36 7.74 -2.39 -0.02 1.34 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.73 7.71 -2.39 -0.02 1.71 16 33 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.06 0.94 8.12 -2.38 -0.02 0.92 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 1.32 7.70 -2.39 -0.02 1.30 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -67.16 291.27 2.78 -64.38 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.99 Total: 6.30 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 3.64 Total: -36.22 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -3.87 Total: -82.34 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -67.16 2.78 -64.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.139 kcal (2) G-P(sol) polarization free energy of solvation -67.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds