Wall clock time and date at job start Sun Mar 29 2020 21:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46797 * 2 1 4 4 C 1.53004 * 109.47320 * 120.00159 * 2 1 3 5 5 C 1.50697 * 109.47177 * 295.00284 * 4 2 1 6 6 H 1.08008 * 119.99936 * 359.97438 * 5 4 2 7 7 C 1.37869 * 119.99979 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00320 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00131 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47088 * 120.00205 * 9 7 5 12 12 H 1.48497 * 109.47171 * 240.00105 * 9 7 5 13 13 C 1.52998 * 109.46836 * 240.00498 * 2 1 3 14 14 N 1.46901 * 109.47338 * 65.18849 * 13 2 1 15 15 C 1.46902 * 110.99809 * 199.80970 * 14 13 2 16 16 C 1.46900 * 110.99862 * 75.86006 * 14 13 2 17 17 C 1.53005 * 109.46963 * 189.99927 * 16 14 13 18 18 C 1.52992 * 117.50026 * 243.74255 * 17 16 14 19 19 C 1.52999 * 117.49777 * 175.08312 * 17 16 14 20 20 H 1.09001 * 109.46936 * 295.10545 * 1 2 3 21 21 H 1.08997 * 109.47409 * 55.11117 * 1 2 3 22 22 H 1.08998 * 109.46868 * 175.11366 * 1 2 3 23 23 H 1.09002 * 109.46838 * 55.00139 * 4 2 1 24 24 H 1.08993 * 109.46740 * 174.99881 * 4 2 1 25 25 H 0.96997 * 120.00290 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.47237 * 305.18719 * 13 2 1 27 27 H 1.09009 * 109.46760 * 185.18728 * 13 2 1 28 28 H 1.08997 * 109.47175 * 291.01996 * 15 14 13 29 29 H 1.08997 * 109.46873 * 51.02612 * 15 14 13 30 30 H 1.09000 * 109.46710 * 171.02134 * 15 14 13 31 31 H 1.08998 * 109.47518 * 69.99827 * 16 14 13 32 32 H 1.09003 * 109.47068 * 309.99928 * 16 14 13 33 33 H 1.08999 * 115.54554 * 29.42067 * 17 16 14 34 34 H 1.09004 * 117.49917 * 0.02562 * 18 17 16 35 35 H 1.08998 * 117.49919 * 145.01844 * 18 17 16 36 36 H 1.08998 * 117.49614 * 214.97946 * 19 17 16 37 37 H 1.08998 * 117.50022 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9925 -0.4024 3.7282 8 7 2.6757 -1.5194 3.8511 9 14 1.4989 0.5626 5.2497 10 1 0.7424 1.7741 4.8435 11 1 0.6442 -0.2860 6.1184 12 1 2.7172 0.9664 5.9966 13 6 2.0400 -0.7211 -1.2493 14 7 1.6553 0.0400 -2.4454 15 6 1.6952 -0.8080 -3.6443 16 6 2.5060 1.2260 -2.6109 17 6 1.9263 2.1203 -3.7087 18 6 2.7707 2.3319 -4.9669 19 6 2.6070 3.4683 -3.9546 20 1 -0.3633 0.4360 0.9306 21 1 -0.3634 0.5878 -0.8429 22 1 -0.3633 -1.0239 -0.0875 23 1 1.6055 -1.7199 1.2951 24 1 3.1264 -0.7995 1.2055 25 1 2.9223 -1.8428 4.7317 26 1 1.6028 -1.7184 -1.2971 27 1 3.1261 -0.8023 -1.2041 28 1 2.7298 -1.0615 -3.8757 29 1 1.1292 -1.7215 -3.4623 30 1 1.2564 -0.2700 -4.4846 31 1 3.5129 0.9150 -2.8895 32 1 2.5435 1.7800 -1.6729 33 1 0.8442 2.0733 -3.8307 34 1 3.7390 1.8335 -5.0128 35 1 2.2441 2.4243 -5.9167 36 1 1.9728 4.3079 -4.2389 37 1 3.4681 3.7178 -3.3346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602454077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:21 Heat of formation + Delta-G solvation = 7.009679 kcal Electronic energy + Delta-G solvation = -14198.946520 eV Core-core repulsion = 11976.363468 eV Total energy + Delta-G solvation = -2222.583052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.44867 -36.38813 -34.05912 -31.90630 -27.54161 -27.15960 -26.21203 -23.57049 -22.39299 -21.62349 -20.22727 -18.85927 -16.32938 -15.87468 -15.05536 -14.87356 -14.38752 -14.02048 -13.62797 -13.14789 -12.61368 -12.27994 -12.01170 -11.67840 -11.51915 -11.47812 -11.27878 -11.09977 -10.81748 -10.66762 -10.30126 -10.22217 -10.20024 -9.93725 -9.49891 -9.07234 -8.91095 -8.29750 -7.95863 -5.94525 -3.95246 3.34226 3.41749 3.46176 3.78686 4.20079 4.51286 4.81802 4.93658 5.06425 5.38686 5.41379 5.47306 5.57461 5.62330 5.68186 5.77148 5.84719 6.01996 6.04673 6.07925 6.11097 6.22394 6.31986 6.44488 6.61621 6.78075 7.06782 7.21473 7.27863 7.44967 7.50888 7.74362 7.90472 8.06372 8.50954 9.11533 9.68052 11.17143 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042794 B = 0.006156 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.143458 B = 4547.430579 C = 4850.734593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.055 0.945 4 C 0.025 3.975 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.059 3.941 14 N -0.537 5.537 15 C 0.028 3.972 16 C 0.084 3.916 17 C -0.139 4.139 18 C -0.187 4.187 19 C -0.180 4.180 20 H 0.055 0.945 21 H 0.041 0.959 22 H 0.036 0.964 23 H 0.015 0.985 24 H 0.012 0.988 25 H 0.258 0.742 26 H 0.067 0.933 27 H 0.029 0.971 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 4.975 -15.019 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.012 4.012 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.068 4.068 14 N -0.261 5.261 15 C -0.121 4.121 16 C -0.044 4.044 17 C -0.157 4.157 18 C -0.224 4.224 19 C -0.218 4.218 20 H 0.074 0.926 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.147 5.008 -14.826 15.691 hybrid contribution 0.692 0.126 0.778 1.049 sum -0.455 5.133 -14.048 14.963 Atomic orbital electron populations 1.21574 0.95836 1.00126 1.00368 1.21184 0.95919 0.99015 0.93624 0.92708 1.19141 0.95868 0.95605 0.90590 1.21282 1.34347 1.08217 0.90959 0.92499 1.25020 0.95383 0.95102 0.99084 1.69978 1.39297 1.21311 1.23204 0.86585 0.78226 0.80168 0.83330 1.19734 1.21104 1.21145 1.22364 0.97703 0.96907 0.89828 1.61993 1.53424 1.07615 1.03043 1.22360 0.99236 0.97184 0.93317 1.21729 0.93063 0.91512 0.98125 1.22317 0.99091 0.97568 0.96739 1.23045 1.01702 1.03551 0.94147 1.22944 1.03379 0.92260 1.03202 0.92646 0.94033 0.94449 0.96620 0.97003 0.93202 0.91431 0.95264 0.96352 0.91877 0.91817 0.95215 0.89814 0.87142 0.89230 0.89217 0.88932 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.91 37.16 0.33 -2.10 16 2 C -0.08 -1.65 2.39 -90.62 -0.22 -1.87 16 3 H 0.05 1.18 6.66 -51.93 -0.35 0.83 16 4 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 5 C -0.51 -14.45 8.34 -34.44 -0.29 -14.74 16 6 H 0.06 1.58 7.08 -52.48 -0.37 1.21 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.06 1.06 4.39 -3.82 -0.02 1.05 16 14 N -0.54 -8.28 4.24 -242.91 -1.03 -9.31 16 15 C 0.03 0.36 9.32 60.07 0.56 0.92 16 16 C 0.08 1.20 5.07 -3.82 -0.02 1.18 16 17 C -0.14 -1.67 4.88 -90.62 -0.44 -2.11 16 18 C -0.19 -1.92 10.18 -26.70 -0.27 -2.19 16 19 C -0.18 -1.90 10.25 -26.70 -0.27 -2.18 16 20 H 0.05 1.19 6.82 -51.93 -0.35 0.83 16 21 H 0.04 0.75 7.90 -51.93 -0.41 0.34 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.07 1.20 7.75 -51.93 -0.40 0.80 16 27 H 0.03 0.54 8.00 -51.92 -0.42 0.12 16 28 H 0.02 0.23 8.08 -51.93 -0.42 -0.19 16 29 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 30 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 31 H 0.03 0.42 7.81 -51.93 -0.41 0.01 16 32 H 0.08 1.32 6.57 -51.93 -0.34 0.98 16 33 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 297.32 15.07 4.48 4.48 Total: -1.00 -29.54 297.32 -8.46 -38.01 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.77 Total: -3.49 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -0.86 Total: -20.03 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.29 Total: -35.85 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.54 -8.46 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.015 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds