Wall clock time and date at job start Sun Mar 29 2020 21:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46797 * 2 1 4 4 C 1.53004 * 109.47320 * 120.00159 * 2 1 3 5 5 C 1.50697 * 109.47177 * 295.00284 * 4 2 1 6 6 H 1.08008 * 119.99936 * 359.97438 * 5 4 2 7 7 C 1.37869 * 119.99979 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00320 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00131 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47088 * 120.00205 * 9 7 5 12 12 H 1.48497 * 109.47171 * 240.00105 * 9 7 5 13 13 C 1.52998 * 109.46836 * 240.00498 * 2 1 3 14 14 N 1.46901 * 109.47338 * 65.18849 * 13 2 1 15 15 C 1.46902 * 110.99809 * 199.80970 * 14 13 2 16 16 C 1.46900 * 110.99862 * 75.86006 * 14 13 2 17 17 C 1.53005 * 109.46963 * 189.99927 * 16 14 13 18 18 C 1.52992 * 117.50026 * 243.74255 * 17 16 14 19 19 C 1.52999 * 117.49777 * 175.08312 * 17 16 14 20 20 H 1.09001 * 109.46936 * 295.10545 * 1 2 3 21 21 H 1.08997 * 109.47409 * 55.11117 * 1 2 3 22 22 H 1.08998 * 109.46868 * 175.11366 * 1 2 3 23 23 H 1.09002 * 109.46838 * 55.00139 * 4 2 1 24 24 H 1.08993 * 109.46740 * 174.99881 * 4 2 1 25 25 H 0.96997 * 120.00290 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.47237 * 305.18719 * 13 2 1 27 27 H 1.09009 * 109.46760 * 185.18728 * 13 2 1 28 28 H 1.08997 * 109.47175 * 291.01996 * 15 14 13 29 29 H 1.08997 * 109.46873 * 51.02612 * 15 14 13 30 30 H 1.09000 * 109.46710 * 171.02134 * 15 14 13 31 31 H 1.08998 * 109.47518 * 69.99827 * 16 14 13 32 32 H 1.09003 * 109.47068 * 309.99928 * 16 14 13 33 33 H 1.08999 * 115.54554 * 29.42067 * 17 16 14 34 34 H 1.09004 * 117.49917 * 0.02562 * 18 17 16 35 35 H 1.08998 * 117.49919 * 145.01844 * 18 17 16 36 36 H 1.08998 * 117.49614 * 214.97946 * 19 17 16 37 37 H 1.08998 * 117.50022 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9925 -0.4024 3.7282 8 7 2.6757 -1.5194 3.8511 9 14 1.4989 0.5626 5.2497 10 1 0.7424 1.7741 4.8435 11 1 0.6442 -0.2860 6.1184 12 1 2.7172 0.9664 5.9966 13 6 2.0400 -0.7211 -1.2493 14 7 1.6553 0.0400 -2.4454 15 6 1.6952 -0.8080 -3.6443 16 6 2.5060 1.2260 -2.6109 17 6 1.9263 2.1203 -3.7087 18 6 2.7707 2.3319 -4.9669 19 6 2.6070 3.4683 -3.9546 20 1 -0.3633 0.4360 0.9306 21 1 -0.3634 0.5878 -0.8429 22 1 -0.3633 -1.0239 -0.0875 23 1 1.6055 -1.7199 1.2951 24 1 3.1264 -0.7995 1.2055 25 1 2.9223 -1.8428 4.7317 26 1 1.6028 -1.7184 -1.2971 27 1 3.1261 -0.8023 -1.2041 28 1 2.7298 -1.0615 -3.8757 29 1 1.1292 -1.7215 -3.4623 30 1 1.2564 -0.2700 -4.4846 31 1 3.5129 0.9150 -2.8895 32 1 2.5435 1.7800 -1.6729 33 1 0.8442 2.0733 -3.8307 34 1 3.7390 1.8335 -5.0128 35 1 2.2441 2.4243 -5.9167 36 1 1.9728 4.3079 -4.2389 37 1 3.4681 3.7178 -3.3346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602454077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:20 Heat of formation + Delta-G solvation = -9.632790 kcal Electronic energy + Delta-G solvation = -14199.668192 eV Core-core repulsion = 11976.363468 eV Total energy + Delta-G solvation = -2223.304724 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61841 -37.63248 -35.75163 -33.90879 -29.11385 -28.61061 -27.74185 -25.40742 -23.19734 -23.08482 -21.29637 -20.52389 -18.49234 -16.90386 -16.68168 -16.15544 -16.03971 -15.30132 -15.01929 -14.46166 -14.24625 -14.07876 -13.30829 -13.15525 -13.03482 -12.76247 -12.70405 -12.49364 -12.33267 -12.20834 -12.19370 -11.90069 -11.46540 -11.17726 -11.06527 -10.88355 -10.71653 -10.52647 -9.21373 -8.16978 -6.25945 1.40224 1.40634 1.53937 2.42555 2.86860 3.07335 3.16466 3.88906 4.03019 4.08326 4.18489 4.34966 4.37392 4.48209 4.55399 4.66961 4.78997 4.81380 4.83543 4.92996 4.96847 5.04116 5.06324 5.10523 5.28166 5.29123 5.36017 5.48304 5.52320 5.58015 5.81752 5.89893 6.13698 6.24893 6.33545 6.89982 7.42323 8.95412 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042794 B = 0.006156 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.143458 B = 4547.430579 C = 4850.734593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 H 0.049 0.951 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.070 3.930 14 N -0.541 5.541 15 C 0.029 3.971 16 C 0.085 3.915 17 C -0.151 4.151 18 C -0.173 4.173 19 C -0.178 4.178 20 H 0.037 0.963 21 H 0.062 0.938 22 H 0.038 0.962 23 H -0.009 1.009 24 H -0.016 1.016 25 H 0.262 0.738 26 H 0.069 0.931 27 H 0.019 0.981 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 6.141 -16.112 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.205 1.205 13 C -0.058 4.058 14 N -0.264 5.264 15 C -0.119 4.119 16 C -0.043 4.043 17 C -0.170 4.170 18 C -0.209 4.209 19 C -0.216 4.216 20 H 0.056 0.944 21 H 0.081 0.919 22 H 0.057 0.943 23 H 0.010 0.990 24 H 0.003 0.997 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.866 6.183 -15.940 17.199 hybrid contribution 0.944 -0.251 1.078 1.455 sum -0.922 5.932 -14.863 16.029 Atomic orbital electron populations 1.21458 0.94677 1.00427 1.00278 1.20984 0.96715 0.98225 0.92900 0.93281 1.19030 0.93990 0.94789 0.92813 1.21652 1.34276 1.08475 0.92062 0.92216 1.25944 0.95257 0.96101 1.02623 1.70108 1.40413 1.22989 1.24206 0.85456 0.78079 0.78907 0.78977 1.18616 1.20448 1.20516 1.22092 0.96908 0.96825 0.89970 1.61944 1.53543 1.07954 1.03005 1.22414 0.99791 0.97194 0.92527 1.21700 0.93200 0.91234 0.98134 1.22162 0.99077 0.98422 0.97305 1.23104 1.01308 1.02491 0.94047 1.23034 1.03189 0.92217 1.03128 0.94418 0.91880 0.94309 0.99040 0.99748 0.92946 0.91296 0.96257 0.95930 0.91462 0.90001 0.95241 0.91933 0.87342 0.89122 0.87533 0.87593 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.91 71.98 0.64 -3.75 16 2 C -0.07 -2.95 2.39 -10.79 -0.03 -2.97 16 3 H 0.05 2.14 6.66 -2.39 -0.02 2.12 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.35 8.34 25.60 0.21 -30.13 16 6 H 0.06 3.34 7.08 -2.91 -0.02 3.31 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -57.91 13.29 21.44 0.28 -57.62 16 9 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 C 0.07 2.51 4.39 86.30 0.38 2.89 16 14 N -0.54 -16.03 4.24 -922.44 -3.91 -19.95 16 15 C 0.03 0.68 9.32 127.69 1.19 1.87 16 16 C 0.09 2.36 5.07 86.30 0.44 2.80 16 17 C -0.15 -3.35 4.88 -10.79 -0.05 -3.40 16 18 C -0.17 -3.05 10.18 30.61 0.31 -2.74 16 19 C -0.18 -3.38 10.25 30.62 0.31 -3.06 16 20 H 0.04 1.59 6.82 -2.39 -0.02 1.58 16 21 H 0.06 2.21 7.90 -2.39 -0.02 2.19 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 25 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 26 H 0.07 2.44 7.75 -2.39 -0.02 2.42 16 27 H 0.02 0.72 8.00 -2.38 -0.02 0.70 16 28 H 0.02 0.52 8.08 -2.39 -0.02 0.50 16 29 H 0.07 1.55 7.85 -2.39 -0.02 1.53 16 30 H 0.08 1.67 7.45 -2.39 -0.02 1.66 16 31 H 0.03 0.81 7.81 -2.39 -0.02 0.79 16 32 H 0.06 1.98 6.57 -2.39 -0.02 1.96 16 33 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.09 1.60 8.03 -2.38 -0.02 1.59 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -63.18 297.32 3.40 -59.79 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.00 Total: 7.06 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 4.00 Total: -36.35 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -3.63 Total: -77.57 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.18 3.40 -59.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.154 kcal (2) G-P(sol) polarization free energy of solvation -63.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds