Wall clock time and date at job start Sun Mar 29 2020 21:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47134 * 2 1 4 4 C 1.52994 * 109.47601 * 239.99592 * 2 1 3 5 5 C 1.50699 * 109.46962 * 64.99917 * 4 2 1 6 6 H 1.07994 * 120.00013 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00038 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00017 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47029 * 90.00005 * 9 7 5 11 11 H 1.48503 * 109.46998 * 209.99643 * 9 7 5 12 12 H 1.48500 * 109.47232 * 329.99979 * 9 7 5 13 13 C 1.53003 * 109.47103 * 119.99519 * 2 1 3 14 14 N 1.46904 * 109.47218 * 292.40248 * 13 2 1 15 15 C 1.47842 * 111.00154 * 68.61513 * 14 13 2 16 16 C 1.54913 * 104.79531 * 146.36815 * 15 14 13 17 17 C 1.55138 * 101.65085 * 322.93030 * 16 15 14 18 18 C 1.47438 * 110.99999 * 189.46284 * 14 13 2 19 19 H 1.09006 * 109.89404 * 117.33680 * 18 14 13 20 20 C 1.52995 * 109.88963 * 356.30395 * 18 14 13 21 21 H 1.08996 * 109.47644 * 319.28674 * 1 2 3 22 22 H 1.08998 * 109.47002 * 79.28911 * 1 2 3 23 23 H 1.09005 * 109.46797 * 199.28316 * 1 2 3 24 24 H 1.09001 * 109.47284 * 184.99800 * 4 2 1 25 25 H 1.09002 * 109.46899 * 305.00213 * 4 2 1 26 26 H 0.97005 * 120.00224 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47599 * 172.40133 * 13 2 1 28 28 H 1.08998 * 109.47281 * 52.39499 * 13 2 1 29 29 H 1.09008 * 110.37609 * 265.19508 * 15 14 13 30 30 H 1.08998 * 110.37529 * 27.53428 * 15 14 13 31 31 H 1.08997 * 110.99289 * 81.01961 * 16 15 14 32 32 H 1.09000 * 110.98605 * 204.83947 * 16 15 14 33 33 H 1.09004 * 110.70724 * 277.27294 * 17 16 15 34 34 H 1.09002 * 110.70565 * 154.03726 * 17 16 15 35 35 H 1.08999 * 109.47219 * 60.33836 * 20 18 14 36 36 H 1.09001 * 109.47110 * 180.33026 * 20 18 14 37 37 H 1.08993 * 109.47595 * 300.33515 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 1 1.0808 0.9744 -2.3757 7 6 1.9935 -0.4019 -3.7281 8 7 1.6451 0.2770 -4.7993 9 14 2.9639 -1.9885 -3.9025 10 1 2.0248 -3.1328 -4.0198 11 1 3.8129 -1.9183 -5.1189 12 1 3.8255 -2.1757 -2.7075 13 6 2.0400 -0.7212 1.2493 14 7 1.7056 0.0691 2.4417 15 6 0.2463 0.0792 2.6785 16 6 0.0959 0.1176 4.2198 17 6 1.2694 -0.7908 4.6719 18 6 2.3719 -0.4742 3.6395 19 1 3.0609 0.2651 4.0481 20 6 3.1331 -1.7510 3.2777 21 1 -0.3634 0.7789 0.6703 22 1 -0.3633 0.1910 -1.0097 23 1 -0.3633 -0.9701 0.3394 24 1 3.1264 -0.7994 -1.2054 25 1 1.6055 -1.7199 -1.2950 26 1 1.8925 -0.0460 -5.6799 27 1 3.1215 -0.8404 1.1841 28 1 1.5699 -1.7020 1.3200 29 1 -0.2047 0.9650 2.2310 30 1 -0.2099 -0.8248 2.2751 31 1 0.2190 1.1321 4.5990 32 1 -0.8625 -0.2996 4.5291 33 1 0.9847 -1.8418 4.6215 34 1 1.5959 -0.5267 5.6778 35 1 3.8876 -1.5232 2.5248 36 1 3.6179 -2.1498 4.1688 37 1 2.4363 -2.4897 2.8818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602468427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:10 Heat of formation + Delta-G solvation = -5.111414 kcal Electronic energy + Delta-G solvation = -14684.918472 eV Core-core repulsion = 12461.809809 eV Total energy + Delta-G solvation = -2223.108662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.53057 -35.36189 -32.42160 -31.72633 -30.38151 -27.34148 -25.87093 -25.23300 -22.37700 -21.01623 -19.48484 -18.90967 -16.67418 -16.20596 -15.42248 -14.78921 -14.18683 -13.81744 -13.32230 -12.98416 -12.82732 -12.45352 -12.21138 -12.05999 -11.91060 -11.44544 -11.26380 -11.16110 -10.81394 -10.76123 -10.55403 -10.36765 -10.14310 -9.67536 -9.64074 -9.28667 -9.01077 -8.48235 -7.97711 -5.98685 -3.95073 3.33389 3.40838 3.44831 4.19923 4.49809 4.67522 4.77919 4.91029 5.31638 5.34807 5.38861 5.43611 5.58351 5.69229 5.71676 5.74218 5.78961 5.93369 5.97081 6.04439 6.10416 6.21443 6.31894 6.39388 6.47623 6.58131 6.82218 7.02381 7.19947 7.31468 7.36609 7.43010 7.59961 7.87059 8.61761 9.07561 9.64471 11.14817 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049457 B = 0.007345 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.010415 B = 3811.226734 C = 4206.510938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 H 0.070 0.930 4 C -0.008 4.008 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.051 3.949 14 N -0.523 5.523 15 C 0.039 3.961 16 C -0.134 4.134 17 C -0.138 4.138 18 C 0.066 3.934 19 H 0.081 0.919 20 C -0.170 4.170 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.014 0.986 25 H 0.008 0.992 26 H 0.262 0.738 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 -3.419 17.639 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 H 0.088 0.912 4 C -0.046 4.046 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.077 4.077 14 N -0.248 5.248 15 C -0.088 4.088 16 C -0.173 4.173 17 C -0.176 4.176 18 C -0.042 4.042 19 H 0.099 0.901 20 C -0.228 4.228 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.317 -2.919 17.344 17.591 hybrid contribution 0.259 -1.743 -0.154 1.769 sum -0.058 -4.662 17.191 17.812 Atomic orbital electron populations 1.22168 0.96413 0.99280 1.02554 1.21008 0.95265 1.00111 0.92851 0.91150 1.19595 0.95811 0.95677 0.93485 1.21145 1.35133 1.09545 0.89089 0.90797 1.25029 0.95696 0.96928 0.95966 1.69918 1.47292 1.39338 0.97973 0.86809 0.80664 0.84365 0.77610 1.20479 1.21487 1.19086 1.22627 1.00615 0.94282 0.90141 1.63730 1.06997 1.51573 1.02460 1.23439 0.89360 1.01672 0.94326 1.22772 0.97949 1.00084 0.96450 1.22866 0.95990 0.99719 0.99035 1.22423 0.95693 0.95207 0.90855 0.90140 1.22386 1.00918 0.97824 1.01678 0.93483 0.91200 0.94632 0.96801 0.97373 0.92872 0.90854 0.95248 0.89534 0.93237 0.90953 0.91316 0.91692 0.91289 0.91440 0.92682 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 7.76 37.16 0.29 -2.52 16 2 C -0.07 -1.50 2.51 -90.62 -0.23 -1.73 16 3 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 4 C -0.01 -0.19 3.51 -27.89 -0.10 -0.29 16 5 C -0.51 -14.65 8.68 -34.44 -0.30 -14.95 16 6 H 0.07 2.28 7.48 -52.49 -0.39 1.88 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.26 13.96 55.43 0.77 -27.49 16 9 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.05 0.87 3.36 -3.82 -0.01 0.86 16 14 N -0.52 -7.96 5.17 -223.34 -1.15 -9.11 16 15 C 0.04 0.54 4.84 -2.30 -0.01 0.53 16 16 C -0.13 -1.48 7.08 -24.59 -0.17 -1.65 16 17 C -0.14 -1.47 6.47 -24.91 -0.16 -1.63 16 18 C 0.07 0.84 4.01 -66.73 -0.27 0.57 16 19 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.17 -2.03 7.85 37.15 0.29 -1.74 16 21 H 0.05 0.79 5.28 -51.93 -0.27 0.52 16 22 H 0.07 1.52 6.64 -51.93 -0.34 1.18 16 23 H 0.03 0.62 6.84 -51.93 -0.36 0.27 16 24 H 0.01 0.34 7.19 -51.93 -0.37 -0.04 16 25 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.07 1.25 6.07 -51.93 -0.32 0.94 16 28 H 0.03 0.50 6.66 -51.93 -0.35 0.15 16 29 H 0.09 1.23 6.07 -51.92 -0.32 0.91 16 30 H 0.05 0.71 6.16 -51.93 -0.32 0.39 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.68 7.85 -51.93 -0.41 0.27 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.86 6.37 -51.93 -0.33 0.53 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.71 6.96 -51.93 -0.36 0.35 16 LS Contribution 273.18 15.07 4.12 4.12 Total: -1.00 -30.17 273.18 -7.93 -38.10 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.23 Total: -2.29 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -0.77 Total: -20.74 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.38 Total: -36.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.17 -7.93 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602468427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.991 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds