Wall clock time and date at job start Sun Mar 29 2020 21:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47134 * 2 1 4 4 C 1.52994 * 109.47601 * 239.99592 * 2 1 3 5 5 C 1.50699 * 109.46962 * 64.99917 * 4 2 1 6 6 H 1.07994 * 120.00013 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00038 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00017 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47029 * 90.00005 * 9 7 5 11 11 H 1.48503 * 109.46998 * 209.99643 * 9 7 5 12 12 H 1.48500 * 109.47232 * 329.99979 * 9 7 5 13 13 C 1.53003 * 109.47103 * 119.99519 * 2 1 3 14 14 N 1.46904 * 109.47218 * 292.40248 * 13 2 1 15 15 C 1.47842 * 111.00154 * 68.61513 * 14 13 2 16 16 C 1.54913 * 104.79531 * 146.36815 * 15 14 13 17 17 C 1.55138 * 101.65085 * 322.93030 * 16 15 14 18 18 C 1.47438 * 110.99999 * 189.46284 * 14 13 2 19 19 H 1.09006 * 109.89404 * 117.33680 * 18 14 13 20 20 C 1.52995 * 109.88963 * 356.30395 * 18 14 13 21 21 H 1.08996 * 109.47644 * 319.28674 * 1 2 3 22 22 H 1.08998 * 109.47002 * 79.28911 * 1 2 3 23 23 H 1.09005 * 109.46797 * 199.28316 * 1 2 3 24 24 H 1.09001 * 109.47284 * 184.99800 * 4 2 1 25 25 H 1.09002 * 109.46899 * 305.00213 * 4 2 1 26 26 H 0.97005 * 120.00224 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47599 * 172.40133 * 13 2 1 28 28 H 1.08998 * 109.47281 * 52.39499 * 13 2 1 29 29 H 1.09008 * 110.37609 * 265.19508 * 15 14 13 30 30 H 1.08998 * 110.37529 * 27.53428 * 15 14 13 31 31 H 1.08997 * 110.99289 * 81.01961 * 16 15 14 32 32 H 1.09000 * 110.98605 * 204.83947 * 16 15 14 33 33 H 1.09004 * 110.70724 * 277.27294 * 17 16 15 34 34 H 1.09002 * 110.70565 * 154.03726 * 17 16 15 35 35 H 1.08999 * 109.47219 * 60.33836 * 20 18 14 36 36 H 1.09001 * 109.47110 * 180.33026 * 20 18 14 37 37 H 1.08993 * 109.47595 * 300.33515 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 1 1.0808 0.9744 -2.3757 7 6 1.9935 -0.4019 -3.7281 8 7 1.6451 0.2770 -4.7993 9 14 2.9639 -1.9885 -3.9025 10 1 2.0248 -3.1328 -4.0198 11 1 3.8129 -1.9183 -5.1189 12 1 3.8255 -2.1757 -2.7075 13 6 2.0400 -0.7212 1.2493 14 7 1.7056 0.0691 2.4417 15 6 0.2463 0.0792 2.6785 16 6 0.0959 0.1176 4.2198 17 6 1.2694 -0.7908 4.6719 18 6 2.3719 -0.4742 3.6395 19 1 3.0609 0.2651 4.0481 20 6 3.1331 -1.7510 3.2777 21 1 -0.3634 0.7789 0.6703 22 1 -0.3633 0.1910 -1.0097 23 1 -0.3633 -0.9701 0.3394 24 1 3.1264 -0.7994 -1.2054 25 1 1.6055 -1.7199 -1.2950 26 1 1.8925 -0.0460 -5.6799 27 1 3.1215 -0.8404 1.1841 28 1 1.5699 -1.7020 1.3200 29 1 -0.2047 0.9650 2.2310 30 1 -0.2099 -0.8248 2.2751 31 1 0.2190 1.1321 4.5990 32 1 -0.8625 -0.2996 4.5291 33 1 0.9847 -1.8418 4.6215 34 1 1.5959 -0.5267 5.6778 35 1 3.8876 -1.5232 2.5248 36 1 3.6179 -2.1498 4.1688 37 1 2.4363 -2.4897 2.8818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602468427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:10 Heat of formation + Delta-G solvation = -24.653651 kcal Electronic energy + Delta-G solvation = -14685.765887 eV Core-core repulsion = 12461.809809 eV Total energy + Delta-G solvation = -2223.956077 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64768 -36.97970 -34.46940 -32.74977 -31.76514 -29.16251 -27.24216 -26.25899 -24.24632 -21.97390 -20.95845 -20.26769 -18.82865 -17.34772 -16.59153 -16.17612 -16.03157 -15.06383 -14.80322 -14.49695 -14.18166 -14.03146 -13.63714 -13.32260 -13.14249 -12.88043 -12.83416 -12.42295 -12.27039 -11.94150 -11.84349 -11.63239 -11.60156 -11.53105 -11.28117 -10.99936 -10.94275 -10.73724 -9.12153 -8.26353 -6.28541 1.34766 1.36903 1.48911 2.37375 3.08422 3.09141 3.73331 3.84497 4.00032 4.17881 4.26156 4.35198 4.46135 4.51253 4.55620 4.67787 4.73770 4.78408 4.90934 4.94805 4.99134 4.99920 5.08138 5.13743 5.24151 5.25681 5.34706 5.40706 5.46988 5.57642 5.71935 5.73939 6.21186 6.24940 6.36326 6.78645 7.34645 8.90528 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049457 B = 0.007345 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.010415 B = 3811.226734 C = 4206.510938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 H 0.048 0.952 4 C -0.004 4.004 5 C -0.518 4.518 6 H 0.033 0.967 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.247 1.247 13 C 0.065 3.935 14 N -0.540 5.540 15 C 0.033 3.967 16 C -0.128 4.128 17 C -0.131 4.131 18 C 0.061 3.939 19 H 0.083 0.917 20 C -0.167 4.167 21 H 0.067 0.933 22 H 0.032 0.968 23 H 0.051 0.949 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.265 0.735 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 -5.201 19.991 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.041 4.041 5 C -0.557 4.557 6 H 0.051 0.949 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.171 1.171 13 C -0.063 4.063 14 N -0.264 5.264 15 C -0.094 4.094 16 C -0.166 4.166 17 C -0.169 4.169 18 C -0.047 4.047 19 H 0.101 0.899 20 C -0.225 4.225 21 H 0.086 0.914 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.253 -4.697 19.726 20.279 hybrid contribution 0.032 -1.072 -0.869 1.380 sum 0.286 -5.769 18.857 19.722 Atomic orbital electron populations 1.22076 0.95559 1.00982 1.00840 1.20889 0.96006 0.98813 0.93243 0.93371 1.19529 0.95844 0.95565 0.93209 1.21441 1.34315 1.08636 0.91264 0.94856 1.26006 0.97008 1.01019 0.95476 1.70076 1.49080 1.41653 0.98695 0.85687 0.79370 0.79470 0.78293 1.19279 1.21031 1.17091 1.22346 1.00425 0.94042 0.89461 1.63636 1.08169 1.51754 1.02854 1.23443 0.88398 1.00908 0.96623 1.22749 0.99107 1.00685 0.94022 1.22844 0.94830 0.99904 0.99320 1.22533 0.96330 0.95557 0.90242 0.89940 1.22338 1.00476 0.97323 1.02333 0.91419 0.94845 0.92968 0.96640 0.96687 0.92659 0.90842 0.94675 0.90595 0.93652 0.90585 0.89581 0.91196 0.89276 0.92599 0.90516 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 7.76 71.98 0.56 -4.70 16 2 C -0.07 -2.88 2.51 -10.79 -0.03 -2.91 16 3 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.00 -0.17 3.51 29.85 0.10 -0.07 16 5 C -0.52 -30.60 8.68 25.60 0.22 -30.38 16 6 H 0.03 2.17 7.48 -2.91 -0.02 2.15 16 7 C 0.00 0.06 5.47 84.65 0.46 0.52 16 8 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 9 Si 0.95 45.31 27.47 68.60 1.88 47.19 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 13 C 0.07 2.14 3.36 86.30 0.29 2.43 16 14 N -0.54 -15.48 5.17 -860.52 -4.45 -19.93 16 15 C 0.03 0.85 4.84 86.78 0.42 1.27 16 16 C -0.13 -2.41 7.08 31.98 0.23 -2.19 16 17 C -0.13 -2.31 6.47 31.78 0.21 -2.11 16 18 C 0.06 1.38 4.01 45.26 0.18 1.56 16 19 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 20 C -0.17 -3.53 7.85 71.98 0.57 -2.96 16 21 H 0.07 2.28 5.28 -2.39 -0.01 2.27 16 22 H 0.03 1.49 6.64 -2.39 -0.02 1.48 16 23 H 0.05 1.79 6.84 -2.38 -0.02 1.77 16 24 H 0.02 0.73 7.19 -2.39 -0.02 0.72 16 25 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 26 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 27 H 0.07 2.40 6.07 -2.39 -0.01 2.39 16 28 H 0.04 1.11 6.66 -2.39 -0.02 1.10 16 29 H 0.08 2.06 6.07 -2.38 -0.01 2.05 16 30 H 0.05 1.19 6.16 -2.39 -0.01 1.18 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.19 7.85 -2.39 -0.02 1.18 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.30 6.37 -2.39 -0.02 1.29 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.15 6.96 -2.39 -0.02 1.13 16 Total: -1.00 -66.00 273.18 1.91 -64.09 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.97 Total: 9.07 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 3.21 Total: -39.54 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -4.15 Total: -80.81 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Total: -66.00 1.91 -64.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602468427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.436 kcal (2) G-P(sol) polarization free energy of solvation -66.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds