Wall clock time and date at job start Sun Mar 29 2020 21:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47589 * 2 1 4 4 C 1.53007 * 109.46362 * 240.00055 * 2 1 3 5 5 C 1.50699 * 109.47295 * 65.00505 * 4 2 1 6 6 H 1.08004 * 119.99968 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00230 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99997 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47232 * 60.00133 * 9 7 5 11 11 H 1.48501 * 109.46984 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46935 * 299.99842 * 9 7 5 13 13 C 1.52998 * 109.46921 * 120.00585 * 2 1 3 14 14 N 1.46900 * 109.46800 * 185.32752 * 13 2 1 15 15 C 1.47438 * 111.00062 * 75.60257 * 14 13 2 16 16 C 1.54320 * 107.23632 * 123.25510 * 15 14 13 17 17 C 1.55144 * 103.01539 * 22.28607 * 16 15 14 18 18 C 1.47845 * 110.99777 * 196.44585 * 14 13 2 19 19 H 1.09000 * 110.37720 * 332.46120 * 18 14 13 20 20 C 1.52997 * 110.37613 * 94.80560 * 18 14 13 21 21 H 1.08990 * 109.47550 * 174.90738 * 1 2 3 22 22 H 1.09007 * 109.46603 * 294.90972 * 1 2 3 23 23 H 1.09004 * 109.46931 * 54.90225 * 1 2 3 24 24 H 1.09007 * 109.46542 * 184.99888 * 4 2 1 25 25 H 1.08997 * 109.47263 * 305.00029 * 4 2 1 26 26 H 0.97004 * 120.00258 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.46974 * 305.32502 * 13 2 1 28 28 H 1.09004 * 109.47218 * 65.33108 * 13 2 1 29 29 H 1.09002 * 109.88939 * 242.66160 * 15 14 13 30 30 H 1.08999 * 109.88910 * 3.84732 * 15 14 13 31 31 H 1.08998 * 110.70933 * 140.66384 * 16 15 14 32 32 H 1.09000 * 110.70774 * 263.72761 * 16 15 14 33 33 H 1.08997 * 110.99464 * 82.43619 * 17 16 15 34 34 H 1.09005 * 110.98805 * 206.25769 * 17 16 15 35 35 H 1.09007 * 109.46820 * 60.00165 * 20 18 14 36 36 H 1.08998 * 109.47336 * 179.97438 * 20 18 14 37 37 H 1.08997 * 109.47685 * 300.00042 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 1.6412 0.0571 -2.4767 6 1 1.0800 0.9743 -2.3757 7 6 1.9930 -0.4017 -3.7284 8 7 2.6768 -1.5182 -3.8513 9 14 1.4994 0.5636 -5.2496 10 1 2.0918 1.9239 -5.1865 11 1 1.9942 -0.1365 -6.4622 12 1 0.0195 0.6704 -5.3095 13 6 2.0400 -0.7214 1.2492 14 7 3.5033 -0.6110 1.3152 15 6 3.9125 0.7379 1.7476 16 6 4.7906 0.5682 3.0052 17 6 5.2967 -0.8933 2.8834 18 6 4.0671 -1.5992 2.2593 19 1 3.3382 -1.8451 3.0315 20 6 4.5003 -2.8624 1.5126 21 1 -0.3634 -1.0235 -0.0912 22 1 -0.3633 0.4329 0.9321 23 1 -0.3633 0.5909 -0.8408 24 1 3.1263 -0.7995 -1.2057 25 1 1.6052 -1.7198 -1.2953 26 1 2.9240 -1.8412 -4.7319 27 1 1.6008 -0.2656 2.1366 28 1 1.7567 -1.7729 1.2026 29 1 4.4862 1.2225 0.9575 30 1 3.0318 1.3334 1.9878 31 1 5.6261 1.2679 2.9892 32 1 4.1972 0.6993 3.9101 33 1 6.1598 -0.9537 2.2205 34 1 5.5295 -1.3089 3.8639 35 1 5.2585 -2.6052 0.7729 36 1 4.9136 -3.5799 2.2215 37 1 3.6380 -3.3020 1.0113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602468428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:11 Heat of formation + Delta-G solvation = -21.328845 kcal Electronic energy + Delta-G solvation = -14654.887007 eV Core-core repulsion = 12431.075104 eV Total energy + Delta-G solvation = -2223.811903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.96508 -35.21647 -32.32470 -31.06771 -30.47192 -26.88987 -25.54573 -24.63418 -22.69261 -21.02227 -19.73230 -18.53549 -16.41073 -15.84983 -15.14121 -14.43434 -13.74091 -13.54006 -13.50725 -12.81443 -12.64971 -12.28605 -11.86900 -11.72700 -11.63702 -11.23696 -10.92825 -10.83618 -10.78477 -10.74310 -10.47371 -10.46816 -10.25355 -10.01263 -9.57231 -9.00271 -8.79455 -8.18528 -7.71879 -5.83655 -3.83855 3.40832 3.45099 3.47492 4.33755 4.57711 4.85200 4.87268 5.14936 5.45438 5.51509 5.60735 5.70897 5.73679 5.84350 5.89016 5.91986 6.06162 6.13922 6.16646 6.17001 6.32458 6.38870 6.44284 6.50093 6.56307 6.70146 7.04875 7.11978 7.37457 7.53751 7.68507 7.90478 8.13887 8.27598 8.63137 9.24013 9.77833 11.27463 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.007764 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.380244 B = 3605.569084 C = 3801.089524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.061 3.939 14 N -0.513 5.513 15 C 0.046 3.954 16 C -0.143 4.143 17 C -0.124 4.124 18 C 0.068 3.932 19 H 0.045 0.955 20 C -0.134 4.134 21 H 0.045 0.955 22 H 0.026 0.974 23 H 0.060 0.940 24 H 0.033 0.967 25 H 0.007 0.993 26 H 0.258 0.742 27 H 0.018 0.982 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 1.178 13.333 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.072 0.928 4 C 0.000 4.000 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.067 4.067 14 N -0.237 5.237 15 C -0.082 4.082 16 C -0.181 4.181 17 C -0.162 4.162 18 C -0.040 4.040 19 H 0.063 0.937 20 C -0.191 4.191 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.026 0.974 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.964 0.960 12.693 13.070 hybrid contribution -0.654 0.677 -0.161 0.955 sum 2.310 1.636 12.532 12.848 Atomic orbital electron populations 1.21705 0.96638 1.01128 0.99510 1.21199 0.93963 0.99236 0.95718 0.92767 1.19025 0.97423 0.94326 0.89186 1.21301 1.34242 1.08133 0.91470 0.93125 1.24984 0.95538 0.95102 0.98816 1.69966 1.39186 1.21248 1.23105 0.86780 0.78738 0.80214 0.82936 1.20451 1.21452 1.20485 1.22428 0.86316 1.00649 0.97273 1.63437 1.10596 1.02387 1.47260 1.22810 0.98341 0.91473 0.95606 1.22796 0.99725 0.97266 0.98346 1.22746 0.98289 0.94855 1.00314 1.22542 0.95002 0.93725 0.92776 0.93658 1.21673 1.02097 0.95504 0.99861 0.93576 0.95456 0.92080 0.94873 0.97429 0.93270 0.96418 0.91703 0.90547 0.93026 0.91180 0.92105 0.90582 0.91555 0.91790 0.93276 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.92 37.16 0.33 -2.24 16 2 C -0.08 -1.75 2.38 -90.61 -0.22 -1.96 16 3 H 0.05 1.18 7.46 -51.93 -0.39 0.79 16 4 C 0.04 0.99 4.40 -27.88 -0.12 0.87 16 5 C -0.51 -14.80 8.47 -34.44 -0.29 -15.10 16 6 H 0.05 1.42 7.06 -52.48 -0.37 1.05 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 9 Si 0.88 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.12 3.97 -3.82 -0.02 1.10 16 14 N -0.51 -9.03 4.16 -223.38 -0.93 -9.96 16 15 C 0.05 0.71 6.23 -2.84 -0.02 0.69 16 16 C -0.14 -1.75 6.94 -24.91 -0.17 -1.93 16 17 C -0.12 -1.54 6.50 -24.59 -0.16 -1.70 16 18 C 0.07 1.00 2.96 -66.19 -0.20 0.81 16 19 H 0.05 0.64 7.81 -51.93 -0.41 0.24 16 20 C -0.13 -1.98 9.59 37.16 0.36 -1.63 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 1.26 7.10 -51.93 -0.37 0.89 16 24 H 0.03 0.95 7.63 -51.93 -0.40 0.56 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.29 7.78 -51.93 -0.40 -0.11 16 28 H 0.06 1.20 7.99 -51.93 -0.42 0.79 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.79 7.20 -51.93 -0.37 0.41 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -30.52 291.91 -8.32 -38.84 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -6.90 Total: -4.07 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -0.60 Total: -19.54 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.19 Total: -36.85 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.52 -8.32 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602468428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.506 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds