Wall clock time and date at job start Sun Mar 29 2020 21:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47589 * 2 1 4 4 C 1.53007 * 109.46362 * 240.00055 * 2 1 3 5 5 C 1.50699 * 109.47295 * 65.00505 * 4 2 1 6 6 H 1.08004 * 119.99968 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00230 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99997 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47232 * 60.00133 * 9 7 5 11 11 H 1.48501 * 109.46984 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46935 * 299.99842 * 9 7 5 13 13 C 1.52998 * 109.46921 * 120.00585 * 2 1 3 14 14 N 1.46900 * 109.46800 * 185.32752 * 13 2 1 15 15 C 1.47438 * 111.00062 * 75.60257 * 14 13 2 16 16 C 1.54320 * 107.23632 * 123.25510 * 15 14 13 17 17 C 1.55144 * 103.01539 * 22.28607 * 16 15 14 18 18 C 1.47845 * 110.99777 * 196.44585 * 14 13 2 19 19 H 1.09000 * 110.37720 * 332.46120 * 18 14 13 20 20 C 1.52997 * 110.37613 * 94.80560 * 18 14 13 21 21 H 1.08990 * 109.47550 * 174.90738 * 1 2 3 22 22 H 1.09007 * 109.46603 * 294.90972 * 1 2 3 23 23 H 1.09004 * 109.46931 * 54.90225 * 1 2 3 24 24 H 1.09007 * 109.46542 * 184.99888 * 4 2 1 25 25 H 1.08997 * 109.47263 * 305.00029 * 4 2 1 26 26 H 0.97004 * 120.00258 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.46974 * 305.32502 * 13 2 1 28 28 H 1.09004 * 109.47218 * 65.33108 * 13 2 1 29 29 H 1.09002 * 109.88939 * 242.66160 * 15 14 13 30 30 H 1.08999 * 109.88910 * 3.84732 * 15 14 13 31 31 H 1.08998 * 110.70933 * 140.66384 * 16 15 14 32 32 H 1.09000 * 110.70774 * 263.72761 * 16 15 14 33 33 H 1.08997 * 110.99464 * 82.43619 * 17 16 15 34 34 H 1.09005 * 110.98805 * 206.25769 * 17 16 15 35 35 H 1.09007 * 109.46820 * 60.00165 * 20 18 14 36 36 H 1.08998 * 109.47336 * 179.97438 * 20 18 14 37 37 H 1.08997 * 109.47685 * 300.00042 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 1.6412 0.0571 -2.4767 6 1 1.0800 0.9743 -2.3757 7 6 1.9930 -0.4017 -3.7284 8 7 2.6768 -1.5182 -3.8513 9 14 1.4994 0.5636 -5.2496 10 1 2.0918 1.9239 -5.1865 11 1 1.9942 -0.1365 -6.4622 12 1 0.0195 0.6704 -5.3095 13 6 2.0400 -0.7214 1.2492 14 7 3.5033 -0.6110 1.3152 15 6 3.9125 0.7379 1.7476 16 6 4.7906 0.5682 3.0052 17 6 5.2967 -0.8933 2.8834 18 6 4.0671 -1.5992 2.2593 19 1 3.3382 -1.8451 3.0315 20 6 4.5003 -2.8624 1.5126 21 1 -0.3634 -1.0235 -0.0912 22 1 -0.3633 0.4329 0.9321 23 1 -0.3633 0.5909 -0.8408 24 1 3.1263 -0.7995 -1.2057 25 1 1.6052 -1.7198 -1.2953 26 1 2.9240 -1.8412 -4.7319 27 1 1.6008 -0.2656 2.1366 28 1 1.7567 -1.7729 1.2026 29 1 4.4862 1.2225 0.9575 30 1 3.0318 1.3334 1.9878 31 1 5.6261 1.2679 2.9892 32 1 4.1972 0.6993 3.9101 33 1 6.1598 -0.9537 2.2205 34 1 5.5295 -1.3089 3.8639 35 1 5.2585 -2.6052 0.7729 36 1 4.9136 -3.5799 2.2215 37 1 3.6380 -3.3020 1.0113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602468428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:11 Heat of formation + Delta-G solvation = -39.544546 kcal Electronic energy + Delta-G solvation = -14655.676899 eV Core-core repulsion = 12431.075104 eV Total energy + Delta-G solvation = -2224.601795 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21410 -36.93435 -34.41734 -32.22509 -31.89383 -28.95656 -26.79469 -26.09695 -24.66855 -22.22470 -20.94506 -20.20306 -18.49334 -17.24346 -16.60047 -16.26862 -15.29109 -14.99950 -14.74838 -14.27459 -14.17631 -13.90336 -13.50768 -13.18880 -12.99451 -12.91762 -12.75662 -12.53002 -12.27627 -12.09449 -11.94972 -11.83879 -11.58443 -11.46031 -11.42579 -10.94843 -10.85326 -10.46221 -9.02768 -8.10807 -6.19791 1.39361 1.42612 1.50057 2.44726 3.10380 3.21476 3.77303 3.78458 4.10579 4.20161 4.30659 4.38776 4.52470 4.56652 4.60594 4.74435 4.78308 4.89316 4.90366 4.93237 5.00391 5.01570 5.12604 5.21924 5.30765 5.40131 5.42298 5.47825 5.50722 5.66341 5.94939 6.03364 6.28972 6.37890 6.39270 6.98558 7.47184 9.00531 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.007764 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.380244 B = 3605.569084 C = 3801.089524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.048 0.952 4 C 0.051 3.949 5 C -0.531 4.531 6 H 0.056 0.944 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.071 3.929 14 N -0.546 5.546 15 C 0.041 3.959 16 C -0.132 4.132 17 C -0.117 4.117 18 C 0.064 3.936 19 H 0.058 0.942 20 C -0.131 4.131 21 H 0.041 0.959 22 H 0.064 0.936 23 H 0.045 0.955 24 H -0.001 1.001 25 H -0.024 1.024 26 H 0.259 0.741 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 2.251 14.797 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.066 0.934 4 C 0.014 3.986 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.057 4.057 14 N -0.271 5.271 15 C -0.087 4.087 16 C -0.170 4.170 17 C -0.155 4.155 18 C -0.044 4.044 19 H 0.076 0.924 20 C -0.188 4.188 21 H 0.060 0.940 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.017 0.983 25 H -0.006 1.006 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.657 2.043 14.172 14.563 hybrid contribution -0.534 0.309 -0.624 0.877 sum 2.122 2.352 13.548 13.914 Atomic orbital electron populations 1.21625 0.95014 1.00922 1.00835 1.21058 0.95335 0.98352 0.94757 0.93370 1.18799 0.95057 0.93161 0.91617 1.21723 1.34164 1.08466 0.92607 0.92595 1.25927 0.95419 0.96127 1.02485 1.70121 1.40352 1.23007 1.23983 0.85623 0.78882 0.78791 0.78463 1.19443 1.21014 1.19242 1.22211 0.87237 0.99738 0.96473 1.63322 1.10181 1.04155 1.49456 1.22810 0.98873 0.90329 0.96645 1.22749 0.99737 0.97412 0.97101 1.22730 0.96696 0.94757 1.01336 1.22643 0.96320 0.92968 0.92482 0.92380 1.21661 1.00514 0.96600 1.00062 0.94022 0.91704 0.93628 0.98279 1.00595 0.93183 0.93784 0.92629 0.92709 0.92757 0.89678 0.90296 0.91385 0.88644 0.93846 0.90154 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.92 71.98 0.64 -4.16 16 2 C -0.08 -3.25 2.38 -10.79 -0.03 -3.28 16 3 H 0.05 2.10 7.46 -2.39 -0.02 2.09 16 4 C 0.05 2.80 4.40 29.85 0.13 2.93 16 5 C -0.53 -31.32 8.47 25.60 0.22 -31.11 16 6 H 0.06 3.16 7.06 -2.91 -0.02 3.14 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 8 N -0.93 -59.26 13.29 21.45 0.28 -58.97 16 9 Si 0.96 45.98 29.54 68.60 2.03 48.00 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 C 0.07 2.57 3.97 86.30 0.34 2.91 16 14 N -0.55 -19.20 4.16 -860.65 -3.58 -22.78 16 15 C 0.04 1.24 6.23 86.65 0.54 1.78 16 16 C -0.13 -2.87 6.94 31.78 0.22 -2.65 16 17 C -0.12 -2.62 6.50 31.98 0.21 -2.41 16 18 C 0.06 1.80 2.96 45.39 0.13 1.93 16 19 H 0.06 1.51 7.81 -2.39 -0.02 1.49 16 20 C -0.13 -3.89 9.59 71.98 0.69 -3.20 16 21 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 23 H 0.04 1.84 7.10 -2.38 -0.02 1.83 16 24 H 0.00 -0.07 7.63 -2.38 -0.02 -0.09 16 25 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 26 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.04 1.36 7.78 -2.39 -0.02 1.34 16 28 H 0.06 2.07 7.99 -2.39 -0.02 2.05 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.58 7.20 -2.39 -0.02 1.56 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 34 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.04 1.43 8.13 -2.38 -0.02 1.42 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -67.34 291.91 3.28 -64.06 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.99 Total: 6.64 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 3.56 Total: -36.95 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -3.29 Total: -81.75 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -67.34 3.28 -64.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602468428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.512 kcal (2) G-P(sol) polarization free energy of solvation -67.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds