Wall clock time and date at job start Sun Mar 29 2020 21:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47349 * 2 1 4 4 C 1.52998 * 109.47338 * 120.00495 * 2 1 3 5 5 C 1.50707 * 109.46785 * 294.99603 * 4 2 1 6 6 H 1.08004 * 119.99967 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99844 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99785 * 179.72537 * 7 5 4 9 9 Si 1.86800 * 119.99998 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47186 * 269.72338 * 9 7 5 11 11 H 1.48499 * 109.46969 * 29.72834 * 9 7 5 12 12 H 1.48507 * 109.46911 * 149.72280 * 9 7 5 13 13 C 1.52999 * 109.47140 * 240.00222 * 2 1 3 14 14 N 1.46900 * 109.47028 * 62.84088 * 13 2 1 15 15 C 1.46901 * 111.00163 * 200.32078 * 14 13 2 16 16 C 1.46901 * 110.99814 * 76.36925 * 14 13 2 17 17 C 1.53782 * 113.61509 * 279.13320 * 16 14 13 18 18 C 1.53951 * 87.02280 * 220.04963 * 17 16 14 19 19 C 1.53783 * 113.61357 * 181.52716 * 16 14 13 20 20 H 1.08996 * 109.46976 * 185.05202 * 1 2 3 21 21 H 1.08998 * 109.46858 * 305.05199 * 1 2 3 22 22 H 1.08998 * 109.47239 * 65.04971 * 1 2 3 23 23 H 1.09004 * 109.47446 * 175.00203 * 4 2 1 24 24 H 1.08992 * 109.47285 * 54.99454 * 4 2 1 25 25 H 0.97000 * 119.99915 * 180.27100 * 8 7 5 26 26 H 1.08999 * 109.47322 * 182.84411 * 13 2 1 27 27 H 1.09005 * 109.47118 * 302.85012 * 13 2 1 28 28 H 1.08998 * 109.47235 * 54.85701 * 15 14 13 29 29 H 1.08999 * 109.47133 * 174.85652 * 15 14 13 30 30 H 1.09002 * 109.46827 * 294.85910 * 15 14 13 31 31 H 1.09000 * 112.85065 * 50.32882 * 16 14 13 32 32 H 1.09000 * 113.61453 * 334.57441 * 17 16 14 33 33 H 1.09001 * 113.61067 * 105.46526 * 17 16 14 34 34 H 1.09005 * 113.53342 * 270.81463 * 18 17 16 35 35 H 1.08995 * 113.66603 * 139.93274 * 18 17 16 36 36 H 1.09000 * 113.61492 * 254.52945 * 19 16 14 37 37 H 1.08999 * 113.61402 * 25.34837 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 1.6493 0.2797 4.7991 9 14 2.9628 -1.9890 3.9027 10 1 2.0235 -3.1327 4.0255 11 1 3.8203 -2.1790 2.7053 12 1 3.8160 -1.9166 5.1161 13 6 2.0400 -0.7212 -1.2493 14 7 1.6072 0.0099 -2.4477 15 6 1.6412 -0.8563 -3.6337 16 6 2.4222 1.2148 -2.6523 17 6 1.9883 2.4069 -1.7830 18 6 2.2515 3.2958 -3.0121 19 6 1.9953 2.0473 -3.8728 20 1 -0.3633 -1.0236 0.0905 21 1 -0.3633 0.5902 0.8413 22 1 -0.3633 0.4335 -0.9317 23 1 3.1264 -0.7995 1.2055 24 1 1.6054 -1.7198 1.2951 25 1 1.8996 -0.0414 5.6795 26 1 3.1288 -0.7656 -1.2242 27 1 1.6355 -1.7331 -1.2752 28 1 1.0469 -1.7509 -3.4475 29 1 1.2304 -0.3186 -4.4882 30 1 2.6716 -1.1421 -3.8454 31 1 3.4927 1.0133 -2.6139 32 1 0.9402 2.3720 -1.4858 33 1 2.6598 2.6053 -0.9476 34 1 3.2757 3.6643 -3.0714 35 1 1.5091 4.0816 -3.1508 36 1 2.6724 1.9559 -4.7221 37 1 0.9495 1.9128 -4.1489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602476906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:14 Heat of formation + Delta-G solvation = -9.966502 kcal Electronic energy + Delta-G solvation = -14642.303939 eV Core-core repulsion = 12418.984744 eV Total energy + Delta-G solvation = -2223.319195 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41969 -37.42800 -35.39940 -33.94503 -29.69892 -27.96095 -26.74034 -26.15189 -24.83260 -22.75896 -20.59415 -20.14173 -18.92277 -16.88170 -16.79112 -16.34337 -15.69559 -15.35601 -14.96171 -14.61831 -14.02188 -13.85939 -13.45346 -13.33226 -13.11390 -12.90745 -12.74495 -12.48673 -12.39819 -12.21246 -11.73866 -11.68114 -11.55231 -11.21480 -11.14310 -10.98819 -10.81927 -10.71102 -9.17861 -8.25887 -6.27804 1.34568 1.36197 1.48093 2.37332 3.08063 3.09169 3.70290 3.85843 3.98498 4.05189 4.18227 4.33576 4.48918 4.55455 4.68377 4.73051 4.84669 4.86865 4.92452 4.97148 5.04272 5.07372 5.09377 5.10947 5.15409 5.38270 5.41841 5.45776 5.52220 5.60958 5.73648 5.77072 6.19734 6.32662 6.37883 6.79733 7.35534 8.90981 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040987 B = 0.007658 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.972717 B = 3655.375709 C = 3951.372715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 H 0.058 0.942 4 C -0.007 4.007 5 C -0.516 4.516 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.249 1.249 12 H -0.285 1.285 13 C 0.068 3.932 14 N -0.536 5.536 15 C 0.027 3.973 16 C 0.049 3.951 17 C -0.135 4.135 18 C -0.135 4.135 19 C -0.114 4.114 20 H 0.039 0.961 21 H 0.023 0.977 22 H 0.066 0.934 23 H 0.011 0.989 24 H 0.015 0.985 25 H 0.264 0.736 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -0.430 -18.966 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.045 4.045 5 C -0.554 4.554 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.173 1.173 12 H -0.211 1.211 13 C -0.060 4.060 14 N -0.259 5.259 15 C -0.121 4.121 16 C -0.060 4.060 17 C -0.173 4.173 18 C -0.173 4.173 19 C -0.152 4.152 20 H 0.059 0.941 21 H 0.042 0.958 22 H 0.085 0.915 23 H 0.029 0.971 24 H 0.033 0.967 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.551 -0.295 -18.736 18.803 hybrid contribution 1.144 -0.738 0.933 1.650 sum 2.695 -1.033 -17.803 18.036 Atomic orbital electron populations 1.21454 0.95213 1.00235 0.99989 1.20976 0.96352 0.99215 0.92508 0.92321 1.19586 0.95564 0.95698 0.93628 1.21443 1.34183 1.08603 0.91191 0.94778 1.25995 0.97025 1.00945 0.95529 1.70075 1.49190 1.41553 0.98699 0.85702 0.79367 0.79659 0.78169 1.19232 1.17315 1.21064 1.22106 0.96852 0.97120 0.89943 1.62190 1.53384 1.07152 1.03216 1.22380 0.99898 0.97059 0.92775 1.23264 0.94662 0.89505 0.98536 1.23049 1.01443 0.96040 0.96761 1.22779 1.02329 0.96690 0.95469 1.22893 1.02326 0.94457 0.95525 0.94141 0.95758 0.91507 0.97086 0.96716 0.92699 0.95647 0.90972 0.91289 0.90023 0.95797 0.92590 0.90484 0.93481 0.89581 0.90404 0.90319 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.85 71.98 0.64 -3.75 16 2 C -0.07 -2.89 2.13 -10.79 -0.02 -2.91 16 3 H 0.06 2.49 5.23 -2.38 -0.01 2.48 16 4 C -0.01 -0.33 3.52 29.85 0.10 -0.23 16 5 C -0.52 -30.43 9.03 25.60 0.23 -30.20 16 6 H 0.03 2.21 7.30 -2.91 -0.02 2.19 16 7 C 0.00 0.06 5.47 84.66 0.46 0.52 16 8 N -0.95 -61.20 13.96 21.45 0.30 -60.91 16 9 Si 0.95 45.51 27.47 68.60 1.88 47.39 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 C 0.07 2.20 4.42 86.30 0.38 2.59 16 14 N -0.54 -14.65 3.96 -893.93 -3.54 -18.19 16 15 C 0.03 0.56 9.29 127.69 1.19 1.75 16 16 C 0.05 1.25 3.14 45.44 0.14 1.39 16 17 C -0.13 -3.78 5.57 31.18 0.17 -3.61 16 18 C -0.13 -2.79 8.09 31.18 0.25 -2.53 16 19 C -0.11 -2.24 6.66 31.12 0.21 -2.03 16 20 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.02 1.06 7.10 -2.39 -0.02 1.05 16 22 H 0.07 2.33 7.54 -2.39 -0.02 2.31 16 23 H 0.01 0.52 7.20 -2.39 -0.02 0.51 16 24 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 25 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 26 H 0.03 0.84 7.90 -2.39 -0.02 0.82 16 27 H 0.07 2.24 7.80 -2.38 -0.02 2.22 16 28 H 0.07 1.40 7.95 -2.39 -0.02 1.38 16 29 H 0.08 1.45 7.18 -2.39 -0.02 1.43 16 30 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 1.49 8.01 -2.39 -0.02 1.47 16 32 H 0.08 2.39 8.09 -2.39 -0.02 2.37 16 33 H 0.05 1.49 7.57 -2.39 -0.02 1.47 16 34 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.74 7.96 -2.39 -0.02 1.72 16 Total: -1.00 -65.52 285.71 3.34 -62.17 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.94 Total: 8.54 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 3.76 Total: -39.01 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -3.24 Total: -79.09 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.39 kcal Total: -65.52 3.34 -62.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602476906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.207 kcal (2) G-P(sol) polarization free energy of solvation -65.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds