Wall clock time and date at job start Sun Mar 29 2020 21:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46764 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47029 * 119.99717 * 9 7 5 12 12 H 1.48494 * 109.47080 * 239.99687 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46901 * 109.46769 * 294.99558 * 13 2 1 15 15 C 1.46839 * 111.00222 * 294.21135 * 14 13 2 16 16 C 1.53034 * 109.52552 * 174.16216 * 15 14 13 17 17 C 1.53123 * 109.28182 * 59.17780 * 16 15 14 18 18 C 1.53120 * 109.16070 * 302.35293 * 17 16 15 19 19 C 1.46849 * 110.99649 * 169.99929 * 14 13 2 20 20 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 21 21 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 22 22 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 24 24 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 25 25 H 0.97010 * 119.99808 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 27 27 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 28 28 H 1.09006 * 109.46266 * 294.17473 * 15 14 13 29 29 H 1.09002 * 109.46276 * 54.14664 * 15 14 13 30 30 H 1.09006 * 109.50444 * 299.24199 * 16 15 14 31 31 H 1.09003 * 109.50687 * 179.12283 * 16 15 14 32 32 H 1.08993 * 109.52832 * 182.44067 * 17 16 15 33 33 H 1.09005 * 109.51783 * 62.25186 * 17 16 15 34 34 H 1.09005 * 109.50142 * 297.71204 * 18 17 16 35 35 H 1.08998 * 109.50777 * 177.59101 * 18 17 16 36 36 H 1.08991 * 109.46839 * 305.85721 * 19 14 13 37 37 H 1.09001 * 109.46094 * 65.83266 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5200 -3.8511 9 14 1.4977 0.5619 -5.2498 10 1 0.7404 1.7730 -4.8436 11 1 2.7156 0.9665 -5.9971 12 1 0.6435 -0.2875 -6.1180 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.3292 1.3394 2.4862 16 6 1.7932 2.1587 3.6625 17 6 2.0394 1.3932 4.9656 18 6 1.3639 0.0219 4.8783 19 6 1.9123 -0.7354 3.6667 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1263 -0.7996 -1.2056 24 1 1.6053 -1.7199 -1.2951 25 1 2.9220 -1.8430 -4.7318 26 1 1.6053 -1.7198 1.2952 27 1 3.1263 -0.7995 1.2057 28 1 3.4016 1.1869 2.6087 29 1 2.1426 1.8753 1.5555 30 1 0.7234 2.3233 3.5338 31 1 2.3077 3.1189 3.7017 32 1 1.6206 1.9530 5.8017 33 1 3.1114 1.2624 5.1142 34 1 0.2873 0.1529 4.7686 35 1 1.5715 -0.5447 5.7860 36 1 1.4229 -1.7065 3.5934 37 1 2.9866 -0.8781 3.7835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602494368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:02 Heat of formation + Delta-G solvation = -46.298550 kcal Electronic energy + Delta-G solvation = -14461.579683 eV Core-core repulsion = 12236.685012 eV Total energy + Delta-G solvation = -2224.894670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.07461 -37.09214 -34.72462 -33.04748 -31.68925 -28.91220 -27.35962 -25.33815 -24.01094 -23.37572 -20.62641 -20.37734 -18.53163 -17.01623 -16.42220 -16.09154 -15.68069 -15.28792 -14.88157 -14.54094 -14.37370 -14.07443 -13.74053 -13.32650 -13.14719 -12.82676 -12.75958 -12.52138 -12.23370 -12.08895 -12.02750 -11.62479 -11.51290 -11.29872 -11.21731 -11.01311 -10.76668 -10.53662 -9.19467 -8.17749 -6.26956 1.39895 1.40279 1.53596 2.41973 3.00706 3.15702 3.91512 3.94498 4.06836 4.16934 4.31532 4.40340 4.50601 4.53975 4.62981 4.70159 4.82818 4.85660 4.94319 5.00195 5.05046 5.11380 5.12102 5.26174 5.28525 5.32034 5.47905 5.49946 5.51909 5.56864 5.80562 5.88584 6.15457 6.28585 6.33220 6.88997 7.41410 8.94692 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060389 B = 0.006146 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.550259 B = 4554.731426 C = 4718.784634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.071 3.929 14 N -0.537 5.537 15 C 0.048 3.952 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.110 4.110 19 C 0.050 3.950 20 H 0.064 0.936 21 H 0.037 0.963 22 H 0.036 0.964 23 H -0.017 1.017 24 H -0.010 1.010 25 H 0.262 0.738 26 H 0.067 0.933 27 H 0.015 0.985 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.237 5.218 16.514 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.057 4.057 14 N -0.261 5.261 15 C -0.079 4.079 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.078 4.078 20 H 0.083 0.917 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.002 0.998 24 H 0.009 0.991 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.671 5.195 16.384 17.394 hybrid contribution 1.031 -0.201 -1.256 1.637 sum -1.640 4.994 15.129 16.016 Atomic orbital electron populations 1.21453 0.94603 1.00369 1.00357 1.21028 0.96764 0.98373 0.92874 0.92891 1.19025 0.93944 0.94757 0.92828 1.21652 1.34313 1.08518 0.92033 0.92151 1.25963 0.95245 0.96100 1.02677 1.70116 1.40430 1.22961 1.24228 0.85439 0.78082 0.78888 0.78904 1.18561 1.20505 1.20458 1.22036 0.96565 0.97096 0.89953 1.61940 1.58431 1.03982 1.01784 1.22184 0.95169 0.90711 0.99876 1.21567 1.01735 0.98039 0.93548 1.21581 1.00461 0.96082 0.97446 1.21565 1.00704 0.96092 0.96444 1.22187 0.98312 0.97225 0.90061 0.91718 0.94358 0.94502 0.99820 0.99124 0.92936 0.91479 0.96689 0.95922 0.91677 0.91467 0.90517 0.90192 0.92396 0.91424 0.89969 0.90891 0.95650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 8.89 71.98 0.64 -3.74 16 2 C -0.07 -3.05 2.26 -10.79 -0.02 -3.08 16 3 H 0.05 2.29 6.22 -2.39 -0.01 2.27 16 4 C 0.03 1.73 4.45 29.85 0.13 1.87 16 5 C -0.53 -30.41 8.41 25.60 0.22 -30.19 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 9 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.07 2.61 4.35 86.30 0.38 2.99 16 14 N -0.54 -16.22 4.11 -896.37 -3.68 -19.91 16 15 C 0.05 1.37 5.30 86.33 0.46 1.82 16 16 C -0.11 -2.39 6.09 30.65 0.19 -2.20 16 17 C -0.12 -2.14 6.00 30.68 0.18 -1.96 16 18 C -0.11 -2.12 6.09 30.65 0.19 -1.94 16 19 C 0.05 1.24 5.46 86.33 0.47 1.71 16 20 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 21 H 0.04 1.60 6.95 -2.38 -0.02 1.59 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 24 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 25 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 26 H 0.07 2.45 7.99 -2.39 -0.02 2.43 16 27 H 0.01 0.57 8.12 -2.39 -0.02 0.55 16 28 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 2.04 6.12 -2.39 -0.01 2.03 16 30 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.77 8.01 -2.39 -0.02 1.75 16 37 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -63.61 287.11 2.91 -60.70 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 0.99 Total: 4.33 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 3.29 Total: -34.41 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -3.40 Total: -77.70 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -63.61 2.91 -60.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602494368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.399 kcal (2) G-P(sol) polarization free energy of solvation -63.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds