Wall clock time and date at job start Sun Mar 29 2020 21:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.53009 * 109.47013 * 119.99561 * 2 1 3 5 5 C 1.50698 * 109.47211 * 295.00506 * 4 2 1 6 6 H 1.08004 * 119.99623 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00074 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99697 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99997 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47335 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46860 * 120.00066 * 9 7 5 12 12 H 1.48497 * 109.47279 * 239.99848 * 9 7 5 13 13 C 1.52995 * 109.47581 * 239.99730 * 2 1 3 14 14 N 1.46897 * 109.47002 * 64.99904 * 13 2 1 15 15 C 1.46905 * 111.00142 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.47056 * 325.00712 * 15 14 13 17 17 C 1.52999 * 109.46590 * 85.00352 * 15 14 13 18 18 C 1.52998 * 109.47084 * 205.00080 * 15 14 13 19 19 C 1.53000 * 117.49463 * 111.38265 * 18 15 14 20 20 C 1.52997 * 60.00347 * 107.48750 * 19 18 15 21 21 H 1.09000 * 109.47171 * 60.00385 * 1 2 3 22 22 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47457 * 300.00304 * 1 2 3 24 24 H 1.09003 * 109.46804 * 55.00147 * 4 2 1 25 25 H 1.09001 * 109.47283 * 175.00231 * 4 2 1 26 26 H 0.97003 * 119.99851 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47308 * 305.00385 * 13 2 1 28 28 H 1.08997 * 109.47431 * 185.00001 * 13 2 1 29 29 H 1.00901 * 111.00644 * 303.95544 * 14 13 2 30 30 H 1.09000 * 109.46771 * 180.02562 * 17 15 14 31 31 H 1.09004 * 109.46979 * 299.99532 * 17 15 14 32 32 H 1.08993 * 109.47403 * 60.00157 * 17 15 14 33 33 H 1.08990 * 115.56470 * 325.69315 * 18 15 14 34 34 H 1.09002 * 117.49696 * 214.97963 * 19 18 15 35 35 H 1.09002 * 117.50343 * 359.97438 * 19 18 15 36 36 H 1.08999 * 117.49685 * 252.51237 * 20 19 18 37 37 H 1.08997 * 117.50044 * 107.48590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6411 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9921 -0.4021 3.7284 8 7 2.6745 -1.5197 3.8514 9 14 1.4984 0.5630 5.2497 10 1 0.7419 1.7746 4.8434 11 1 0.6437 -0.2855 6.1184 12 1 2.7166 0.9669 5.9967 13 6 2.0400 -0.7213 -1.2491 14 7 1.6514 0.0373 -2.4455 15 6 2.1259 -0.6266 -3.6671 16 1 3.0897 -1.0977 -3.4736 17 6 1.1142 -1.6919 -4.0943 18 6 2.2789 0.4083 -4.7835 19 6 3.6975 0.7351 -5.2542 20 6 2.7665 -0.0890 -6.1458 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6053 -1.7198 1.2953 25 1 3.1262 -0.7994 1.2058 26 1 2.9211 -1.8429 4.7321 27 1 1.6054 -1.7198 -1.2951 28 1 3.1263 -0.7995 -1.2055 29 1 0.6529 0.1792 -2.4754 30 1 1.4664 -2.1848 -5.0003 31 1 1.0053 -2.4292 -3.2988 32 1 0.1505 -1.2209 -4.2877 33 1 1.5519 1.2203 -4.7749 34 1 3.9038 1.7621 -5.5553 35 1 4.5219 0.2131 -4.7683 36 1 2.9783 -1.1535 -6.2466 37 1 2.3603 0.3958 -7.0335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:36 Heat of formation + Delta-G solvation = -3.438481 kcal Electronic energy + Delta-G solvation = -13996.778377 eV Core-core repulsion = 11773.742259 eV Total energy + Delta-G solvation = -2223.036118 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.45537 -36.30182 -33.84853 -32.01985 -29.14382 -26.77620 -25.43074 -23.68896 -22.29896 -21.99403 -20.13536 -18.82613 -16.40031 -15.95963 -15.19647 -14.57318 -14.52050 -13.98524 -13.49642 -12.91122 -12.80918 -12.53478 -12.12291 -11.79983 -11.72651 -11.39350 -11.34978 -10.89481 -10.80122 -10.73810 -10.41595 -10.29634 -10.12414 -9.96308 -9.68090 -9.10856 -8.91557 -8.30903 -8.03436 -5.95464 -3.96373 3.33733 3.41263 3.45523 3.77918 4.36433 4.51224 4.78619 4.92570 5.12032 5.29583 5.35450 5.40479 5.45242 5.57361 5.70850 5.74995 5.86158 5.86833 6.00026 6.08167 6.08891 6.11926 6.31817 6.33737 6.51561 6.60206 7.00551 7.14234 7.21234 7.45944 7.72141 7.74887 7.89583 8.05227 8.49349 9.10315 9.67002 11.16170 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.061015 B = 0.005181 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.791762 B = 5402.997243 C = 5442.383411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.683 5.683 15 C 0.111 3.889 16 H 0.074 0.926 17 C -0.179 4.179 18 C -0.131 4.131 19 C -0.176 4.176 20 C -0.186 4.186 21 H 0.031 0.969 22 H 0.040 0.960 23 H 0.062 0.938 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.258 0.742 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.338 0.662 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 1.408 -16.475 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.063 4.063 14 N -0.314 5.314 15 C 0.001 3.999 16 H 0.093 0.907 17 C -0.238 4.238 18 C -0.150 4.150 19 C -0.213 4.213 20 C -0.224 4.224 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.157 0.843 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.126 1.722 -16.295 16.424 hybrid contribution -0.806 -0.355 0.866 1.235 sum -1.932 1.367 -15.428 15.609 Atomic orbital electron populations 1.21734 0.96729 1.00377 1.00242 1.21222 0.94837 1.00106 0.94178 0.91658 1.19120 0.96126 0.95362 0.90418 1.21288 1.34479 1.08224 0.90988 0.92506 1.25023 0.95358 0.95097 0.99101 1.69980 1.39261 1.21263 1.23225 0.86577 0.78250 0.80134 0.83294 1.19740 1.21141 1.21088 1.22151 1.00134 0.94519 0.89540 1.60591 1.19558 1.50188 1.01097 1.21092 0.98154 0.91427 0.89257 0.90732 1.22466 1.00016 0.99704 1.01612 1.22217 0.97762 1.01110 0.93890 1.22949 0.93946 1.00639 1.03795 1.22947 1.05083 1.00093 0.94247 0.94972 0.94079 0.91902 0.96781 0.96683 0.93183 0.95868 0.91628 0.84291 0.92357 0.92556 0.92526 0.87786 0.89132 0.88958 0.89094 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.77 37.15 0.33 -2.20 16 2 C -0.08 -1.76 2.54 -90.62 -0.23 -1.99 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.07 1.16 4.94 -3.83 -0.02 1.14 16 14 N -0.68 -10.30 6.25 -106.73 -0.67 -10.97 16 15 C 0.11 1.42 2.82 -67.71 -0.19 1.23 16 16 H 0.07 1.01 7.56 -51.93 -0.39 0.62 16 17 C -0.18 -2.03 9.00 37.16 0.33 -1.70 16 18 C -0.13 -1.50 5.46 -90.62 -0.49 -1.99 16 19 C -0.18 -1.88 10.18 -26.73 -0.27 -2.15 16 20 C -0.19 -1.78 9.74 -26.73 -0.26 -2.04 16 21 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.41 7.44 -51.93 -0.39 0.02 16 28 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 29 H 0.34 4.84 6.73 -39.29 -0.26 4.58 16 30 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 31 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 32 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.00 8.05 -51.93 -0.42 0.59 16 36 H 0.09 0.83 7.61 -51.93 -0.40 0.43 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 296.44 15.07 4.47 4.47 Total: -1.00 -29.38 296.44 -8.43 -37.82 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.63 Total: 0.72 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -1.32 Total: -22.40 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.07 Total: -37.46 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.38 -8.43 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.379 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds