Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46891 * 109.47014 * 120.00820 * 2 1 3 5 5 C 1.46900 * 110.99776 * 274.99216 * 4 2 1 6 6 C 1.53006 * 109.47303 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.46505 * 304.99837 * 6 5 4 8 8 C 1.52997 * 109.47127 * 64.99966 * 6 5 4 9 9 C 1.52992 * 109.47223 * 185.00471 * 6 5 4 10 10 C 1.50697 * 109.47463 * 174.99857 * 9 6 5 11 11 H 1.08007 * 119.99713 * 0.02562 * 10 9 6 12 12 C 1.37879 * 120.00558 * 179.97438 * 10 9 6 13 13 N 1.31509 * 119.99821 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00224 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47047 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47062 * 119.99736 * 14 12 10 17 17 H 1.48495 * 109.47299 * 240.00155 * 14 12 10 18 18 C 1.53001 * 109.46662 * 240.00503 * 2 1 3 19 19 C 1.52997 * 117.49992 * 128.62340 * 18 2 1 20 20 C 1.52998 * 117.50134 * 59.99745 * 18 2 1 21 21 H 1.09006 * 109.46454 * 299.99859 * 1 2 3 22 22 H 1.09000 * 109.47177 * 59.98882 * 1 2 3 23 23 H 1.08992 * 109.47306 * 179.97438 * 1 2 3 24 24 H 1.00905 * 110.99802 * 151.04461 * 4 2 1 25 25 H 1.09007 * 109.47006 * 60.00373 * 5 4 2 26 26 H 1.08996 * 109.47541 * 300.00579 * 5 4 2 27 27 H 1.09002 * 109.47153 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.46832 * 60.00321 * 8 6 5 29 29 H 1.09004 * 109.47261 * 300.00303 * 8 6 5 30 30 H 1.09002 * 109.46906 * 294.99936 * 9 6 5 31 31 H 1.09006 * 109.47717 * 54.99311 * 9 6 5 32 32 H 0.97002 * 120.00259 * 179.97438 * 13 12 10 33 33 H 1.09004 * 115.54859 * 274.33173 * 18 2 1 34 34 H 1.08997 * 117.49795 * 359.97438 * 19 18 2 35 35 H 1.08998 * 117.49904 * 145.02065 * 19 18 2 36 36 H 1.09002 * 117.50368 * 214.98032 * 20 18 2 37 37 H 1.09002 * 117.49901 * 359.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0826 0.2224 2.3468 6 6 2.5964 -0.5332 3.5741 7 1 1.9710 -1.4084 3.7499 8 6 4.0400 -0.9782 3.3316 9 6 2.5441 0.3848 4.7969 10 6 2.9331 -0.3942 6.0269 11 1 3.1921 -1.4396 5.9445 12 6 2.9593 0.2276 7.2572 13 7 2.6445 1.5005 7.3574 14 14 3.4407 -0.7383 8.7819 15 1 3.7465 -2.1413 8.4030 16 1 4.6410 -0.1205 9.4007 17 1 2.3182 -0.7210 9.7538 18 6 2.0399 -0.7212 -1.2493 19 6 3.0741 0.0052 -2.1118 20 6 1.6356 -0.1494 -2.6096 21 1 -0.3632 0.5139 0.8901 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 2.9173 -1.1206 1.0285 25 1 1.0872 0.6162 2.5525 26 1 2.7590 1.0460 2.1182 27 1 4.4058 -1.5169 4.2057 28 1 4.6653 -0.1029 3.1558 29 1 4.0771 -1.6322 2.4604 30 1 3.2372 1.2145 4.6581 31 1 1.5326 0.7726 4.9172 32 1 2.6625 1.9380 8.2230 33 1 2.1266 -1.8044 -1.1644 34 1 3.3908 0.9971 -1.7893 35 1 3.8414 -0.6001 -2.5943 36 1 1.4566 -0.8563 -3.4198 37 1 1.0059 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = -3.316507 kcal Electronic energy + Delta-G solvation = -13999.728263 eV Core-core repulsion = 11776.697434 eV Total energy + Delta-G solvation = -2223.030829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.51457 -36.27754 -33.75162 -31.99911 -29.26718 -26.75156 -25.66286 -23.52461 -22.40486 -21.84167 -20.05103 -18.81449 -16.48986 -16.24767 -15.10104 -14.59218 -14.52261 -13.91510 -13.40972 -13.22793 -12.53334 -12.48594 -12.01722 -11.80243 -11.75848 -11.42802 -11.36694 -10.87780 -10.80328 -10.60004 -10.49008 -10.28010 -10.21007 -10.00444 -9.67461 -9.10784 -8.91140 -8.30779 -8.07565 -5.95254 -3.96186 3.33854 3.41353 3.45605 3.67058 4.31246 4.50933 4.68027 4.82572 4.98328 5.30693 5.39361 5.40673 5.48958 5.60251 5.73964 5.78524 5.86229 5.89763 5.98022 6.08450 6.10803 6.13692 6.33048 6.40193 6.53161 6.61989 7.01044 7.14555 7.21638 7.46658 7.72550 7.75546 7.89881 8.05418 8.49539 9.10491 9.67172 11.16383 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.066576 B = 0.005212 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.469995 B = 5371.281407 C = 5529.451425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.112 3.888 3 H 0.039 0.961 4 N -0.684 5.684 5 C 0.065 3.935 6 C -0.084 4.084 7 H 0.065 0.935 8 C -0.133 4.133 9 C 0.027 3.973 10 C -0.511 4.511 11 H 0.057 0.943 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.152 4.152 19 C -0.185 4.185 20 C -0.175 4.175 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.339 0.661 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 -2.803 -16.630 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.002 3.998 3 H 0.057 0.943 4 N -0.317 5.317 5 C -0.064 4.064 6 C -0.103 4.103 7 H 0.083 0.917 8 C -0.191 4.191 9 C -0.010 4.010 10 C -0.550 4.550 11 H 0.075 0.925 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.170 4.170 19 C -0.222 4.222 20 C -0.213 4.213 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.158 0.842 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.559 -2.908 -16.331 16.661 hybrid contribution 1.058 0.167 0.693 1.276 sum -0.501 -2.742 -15.638 15.885 Atomic orbital electron populations 1.21750 0.94569 1.02244 1.00853 1.21067 0.95771 0.94929 0.88007 0.94283 1.60657 1.33349 1.33738 1.03907 1.22178 1.00205 0.93441 0.90570 1.21218 0.95340 0.99445 0.94306 0.91659 1.21737 0.97327 0.99884 1.00141 1.19117 0.97024 0.94222 0.90668 1.21287 1.45040 0.96565 0.92084 0.92505 1.25022 0.95639 0.94874 0.99042 1.69977 1.49356 1.10065 1.24328 0.86577 0.78079 0.80271 0.83331 1.19740 1.21142 1.21086 1.22499 1.03279 0.99746 0.91518 1.23045 0.92551 1.02090 1.04482 1.22891 0.97964 1.03247 0.97170 0.92583 0.93100 0.92060 0.84195 0.91534 0.95980 0.91903 0.94080 0.94948 0.96791 0.96679 0.93181 0.87233 0.88964 0.88929 0.88924 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.26 37.16 0.34 -1.35 16 2 C 0.11 1.46 2.85 -67.71 -0.19 1.27 16 3 H 0.04 0.54 7.56 -51.93 -0.39 0.14 16 4 N -0.68 -10.44 6.31 -106.72 -0.67 -11.11 16 5 C 0.06 1.16 4.94 -3.82 -0.02 1.14 16 6 C -0.08 -1.76 2.54 -90.62 -0.23 -1.99 16 7 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 8 C -0.13 -2.54 8.77 37.16 0.33 -2.22 16 9 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 10 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 11 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 12 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 C -0.15 -1.66 5.11 -90.62 -0.46 -2.13 16 19 C -0.18 -1.80 10.18 -26.73 -0.27 -2.08 16 20 C -0.18 -1.62 9.74 -26.73 -0.26 -1.88 16 21 H 0.06 0.75 7.45 -51.93 -0.39 0.37 16 22 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.34 4.94 6.61 -39.29 -0.26 4.68 16 25 H 0.07 1.24 7.44 -51.93 -0.39 0.85 16 26 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 27 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 0.92 8.05 -51.93 -0.42 0.51 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.84 7.61 -51.93 -0.39 0.45 16 LS Contribution 296.33 15.07 4.47 4.47 Total: -1.00 -29.44 296.33 -8.40 -37.84 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.63 Total: 0.41 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.28 Total: -21.94 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.06 Total: -37.63 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.44 -8.40 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.528 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds