Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46891 * 109.47014 * 120.00820 * 2 1 3 5 5 C 1.46900 * 110.99776 * 274.99216 * 4 2 1 6 6 C 1.53006 * 109.47303 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.46505 * 304.99837 * 6 5 4 8 8 C 1.52997 * 109.47127 * 64.99966 * 6 5 4 9 9 C 1.52992 * 109.47223 * 185.00471 * 6 5 4 10 10 C 1.50697 * 109.47463 * 174.99857 * 9 6 5 11 11 H 1.08007 * 119.99713 * 0.02562 * 10 9 6 12 12 C 1.37879 * 120.00558 * 179.97438 * 10 9 6 13 13 N 1.31509 * 119.99821 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00224 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47047 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47062 * 119.99736 * 14 12 10 17 17 H 1.48495 * 109.47299 * 240.00155 * 14 12 10 18 18 C 1.53001 * 109.46662 * 240.00503 * 2 1 3 19 19 C 1.52997 * 117.49992 * 128.62340 * 18 2 1 20 20 C 1.52998 * 117.50134 * 59.99745 * 18 2 1 21 21 H 1.09006 * 109.46454 * 299.99859 * 1 2 3 22 22 H 1.09000 * 109.47177 * 59.98882 * 1 2 3 23 23 H 1.08992 * 109.47306 * 179.97438 * 1 2 3 24 24 H 1.00905 * 110.99802 * 151.04461 * 4 2 1 25 25 H 1.09007 * 109.47006 * 60.00373 * 5 4 2 26 26 H 1.08996 * 109.47541 * 300.00579 * 5 4 2 27 27 H 1.09002 * 109.47153 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.46832 * 60.00321 * 8 6 5 29 29 H 1.09004 * 109.47261 * 300.00303 * 8 6 5 30 30 H 1.09002 * 109.46906 * 294.99936 * 9 6 5 31 31 H 1.09006 * 109.47717 * 54.99311 * 9 6 5 32 32 H 0.97002 * 120.00259 * 179.97438 * 13 12 10 33 33 H 1.09004 * 115.54859 * 274.33173 * 18 2 1 34 34 H 1.08997 * 117.49795 * 359.97438 * 19 18 2 35 35 H 1.08998 * 117.49904 * 145.02065 * 19 18 2 36 36 H 1.09002 * 117.50368 * 214.98032 * 20 18 2 37 37 H 1.09002 * 117.49901 * 359.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0826 0.2224 2.3468 6 6 2.5964 -0.5332 3.5741 7 1 1.9710 -1.4084 3.7499 8 6 4.0400 -0.9782 3.3316 9 6 2.5441 0.3848 4.7969 10 6 2.9331 -0.3942 6.0269 11 1 3.1921 -1.4396 5.9445 12 6 2.9593 0.2276 7.2572 13 7 2.6445 1.5005 7.3574 14 14 3.4407 -0.7383 8.7819 15 1 3.7465 -2.1413 8.4030 16 1 4.6410 -0.1205 9.4007 17 1 2.3182 -0.7210 9.7538 18 6 2.0399 -0.7212 -1.2493 19 6 3.0741 0.0052 -2.1118 20 6 1.6356 -0.1494 -2.6096 21 1 -0.3632 0.5139 0.8901 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 2.9173 -1.1206 1.0285 25 1 1.0872 0.6162 2.5525 26 1 2.7590 1.0460 2.1182 27 1 4.4058 -1.5169 4.2057 28 1 4.6653 -0.1029 3.1558 29 1 4.0771 -1.6322 2.4604 30 1 3.2372 1.2145 4.6581 31 1 1.5326 0.7726 4.9172 32 1 2.6625 1.9380 8.2230 33 1 2.1266 -1.8044 -1.1644 34 1 3.3908 0.9971 -1.7893 35 1 3.8414 -0.6001 -2.5943 36 1 1.4566 -0.8563 -3.4198 37 1 1.0059 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602504124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = -20.585853 kcal Electronic energy + Delta-G solvation = -14000.477118 eV Core-core repulsion = 11776.697434 eV Total energy + Delta-G solvation = -2223.779684 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54660 -37.70392 -35.36005 -33.85193 -30.58950 -28.65656 -27.12811 -25.08438 -23.35079 -23.12292 -21.16551 -20.39044 -18.52069 -17.44135 -16.61076 -16.21922 -15.71242 -15.25253 -14.80699 -14.63933 -14.16944 -13.81549 -13.60572 -13.29843 -12.99466 -12.82209 -12.70502 -12.58428 -12.25533 -12.22493 -11.88891 -11.74770 -11.46764 -11.31009 -11.05675 -10.96420 -10.78316 -10.54037 -9.34028 -8.17408 -6.26665 1.40372 1.40772 1.54032 2.42401 2.87161 3.16117 3.22155 3.77589 4.03287 4.13847 4.20568 4.26193 4.36000 4.41533 4.52905 4.67184 4.74113 4.77498 4.83673 4.93613 5.00910 5.03453 5.10209 5.22562 5.26841 5.30318 5.39800 5.41151 5.48255 5.56368 5.80305 5.89228 6.15206 6.32056 6.55572 6.89450 7.41769 8.95045 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.066576 B = 0.005212 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.469995 B = 5371.281407 C = 5529.451425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.111 3.889 3 H 0.032 0.968 4 N -0.683 5.683 5 C 0.079 3.921 6 C -0.076 4.076 7 H 0.056 0.944 8 C -0.126 4.126 9 C 0.032 3.968 10 C -0.528 4.528 11 H 0.061 0.939 12 C -0.003 4.003 13 N -0.936 5.936 14 Si 0.962 3.038 15 H -0.261 1.261 16 H -0.279 1.279 17 H -0.280 1.280 18 C -0.163 4.163 19 C -0.183 4.183 20 C -0.163 4.163 21 H 0.038 0.962 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.345 0.655 25 H 0.054 0.946 26 H 0.019 0.981 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.066 0.934 30 H -0.011 1.011 31 H -0.015 1.015 32 H 0.262 0.738 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -4.097 -17.789 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.002 3.998 3 H 0.050 0.950 4 N -0.316 5.316 5 C -0.051 4.051 6 C -0.094 4.094 7 H 0.075 0.925 8 C -0.183 4.183 9 C -0.005 4.005 10 C -0.566 4.566 11 H 0.080 0.920 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.185 1.185 16 H -0.205 1.205 17 H -0.206 1.206 18 C -0.181 4.181 19 C -0.220 4.220 20 C -0.200 4.200 21 H 0.057 0.943 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.165 0.835 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.007 0.993 31 H 0.004 0.996 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.068 -4.214 -17.511 18.043 hybrid contribution 0.876 0.604 1.007 1.465 sum -0.192 -3.610 -16.504 16.895 Atomic orbital electron populations 1.21740 0.94231 1.02168 1.01056 1.21114 0.96034 0.94659 0.88021 0.94981 1.60594 1.33740 1.33206 1.04050 1.21860 0.99220 0.93356 0.90637 1.21018 0.96911 0.98083 0.93438 0.92506 1.21641 0.95487 1.00260 1.00906 1.19011 0.94379 0.94275 0.92873 1.21674 1.44863 0.96967 0.93128 0.92033 1.25963 0.95507 0.95875 1.02643 1.70111 1.50415 1.11858 1.25354 0.85437 0.77829 0.79138 0.78892 1.18515 1.20477 1.20555 1.22363 1.04927 0.99599 0.91247 1.23108 0.93158 1.01821 1.03947 1.22987 0.97492 1.03357 0.96198 0.94281 0.91037 0.92220 0.83531 0.92712 0.96242 0.93516 0.94159 0.91474 0.99261 0.99620 0.92944 0.87116 0.89454 0.87696 0.87345 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.26 71.98 0.67 -2.52 16 2 C 0.11 2.75 2.85 44.92 0.13 2.88 16 3 H 0.03 0.85 7.56 -2.39 -0.02 0.83 16 4 N -0.68 -20.09 6.31 -491.57 -3.10 -23.19 16 5 C 0.08 2.83 4.94 86.31 0.43 3.26 16 6 C -0.08 -3.18 2.54 -10.79 -0.03 -3.21 16 7 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 8 C -0.13 -4.67 8.77 71.98 0.63 -4.03 16 9 C 0.03 1.73 4.45 29.84 0.13 1.87 16 10 C -0.53 -30.37 8.41 25.60 0.22 -30.15 16 11 H 0.06 3.41 7.06 -2.91 -0.02 3.38 16 12 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 13 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 14 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 C -0.16 -3.20 5.11 -10.79 -0.06 -3.26 16 19 C -0.18 -3.14 10.18 30.59 0.31 -2.83 16 20 C -0.16 -2.56 9.74 30.59 0.30 -2.26 16 21 H 0.04 1.04 7.45 -2.38 -0.02 1.02 16 22 H 0.07 1.38 7.29 -2.39 -0.02 1.36 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.34 9.38 6.61 -89.69 -0.59 8.79 16 25 H 0.05 2.09 7.44 -2.38 -0.02 2.07 16 26 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 27 H 0.05 1.87 6.95 -2.39 -0.02 1.85 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 2.01 6.68 -2.38 -0.02 2.00 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.09 1.59 8.05 -2.39 -0.02 1.57 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.47 7.61 -2.39 -0.02 1.45 16 Total: -1.00 -63.37 296.33 2.82 -60.55 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.42 Total: 13.33 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 3.19 Total: -39.96 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -2.82 Total: -80.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.37 2.82 -60.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.960 kcal (2) G-P(sol) polarization free energy of solvation -63.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds