Wall clock time and date at job start Sun Mar 29 2020 21:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 H 1.09000 * 109.46982 * 324.99932 * 15 14 13 17 17 C 1.53008 * 109.47109 * 85.00215 * 15 14 13 18 18 C 1.52999 * 109.47155 * 204.99904 * 15 14 13 19 19 C 1.53000 * 117.49890 * 248.62389 * 18 15 14 20 20 C 1.52998 * 117.50151 * 180.02562 * 18 15 14 21 21 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 22 22 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 23 23 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 25 25 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 28 28 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 29 29 H 1.00901 * 111.00285 * 56.04255 * 14 13 2 30 30 H 1.08993 * 109.46747 * 299.99635 * 17 15 14 31 31 H 1.08994 * 109.46999 * 60.00076 * 17 15 14 32 32 H 1.08998 * 109.47057 * 179.97438 * 17 15 14 33 33 H 1.09000 * 115.54870 * 34.32389 * 18 15 14 34 34 H 1.08998 * 117.50112 * 359.97438 * 19 18 15 35 35 H 1.09000 * 117.50141 * 145.02236 * 19 18 15 36 36 H 1.08996 * 117.50294 * 214.97976 * 20 18 15 37 37 H 1.09000 * 117.49578 * 0.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 1 2.0824 -1.7076 3.5333 17 6 3.5694 -0.2052 3.9490 18 6 1.2372 -0.2226 4.8452 19 6 1.8589 0.6613 5.9283 20 6 1.5708 -0.8129 6.2168 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0275 0.0005 24 1 1.6053 -1.7198 -1.2952 25 1 3.1262 -0.7995 -1.2056 26 1 2.9362 -2.0177 -3.0611 27 1 1.6053 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 0.6529 0.1793 2.4753 30 1 4.2024 -0.4931 3.1097 31 1 3.6127 0.8757 4.0828 32 1 3.9212 -0.6975 4.8555 33 1 0.1854 -0.0634 4.6078 34 1 2.9011 0.9545 5.8018 35 1 1.2161 1.4022 6.4037 36 1 0.7384 -1.0422 6.8819 37 1 2.4235 -1.4888 6.2798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:39 Heat of formation + Delta-G solvation = -3.399723 kcal Electronic energy + Delta-G solvation = -14043.722172 eV Core-core repulsion = 11820.687734 eV Total energy + Delta-G solvation = -2223.034438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.74890 -36.43656 -33.88130 -31.99987 -29.08980 -26.45983 -25.84032 -23.70879 -22.56774 -21.97612 -19.66876 -18.98012 -16.70807 -16.44103 -15.38462 -14.94186 -14.10586 -13.87038 -13.63269 -13.25729 -12.75496 -12.50785 -11.99881 -11.84487 -11.62513 -11.40380 -11.32581 -11.01065 -10.80293 -10.66949 -10.53723 -10.17254 -10.13140 -10.03934 -9.78163 -9.40617 -8.43991 -8.26689 -8.12770 -6.29620 -3.97475 3.46615 3.50702 3.63860 3.66271 4.35864 4.59643 4.62880 4.81782 4.95707 5.11738 5.34001 5.46616 5.47118 5.55724 5.68534 5.71636 5.76300 5.82705 5.98090 5.98851 6.02667 6.07351 6.22255 6.32600 6.42215 6.51714 6.86891 7.04978 7.06961 7.36350 7.46411 7.61357 7.69964 8.30372 8.53928 8.95809 9.74077 11.10899 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.071683 B = 0.005147 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.514161 B = 5438.439462 C = 5584.435071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 H 0.066 0.934 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.683 5.683 15 C 0.111 3.889 16 H 0.043 0.957 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.177 4.177 20 C -0.181 4.181 21 H 0.033 0.967 22 H 0.063 0.937 23 H 0.039 0.961 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.268 0.732 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.338 0.662 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 2.020 17.134 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.316 5.316 15 C 0.002 3.998 16 H 0.061 0.939 17 C -0.199 4.199 18 C -0.171 4.171 19 C -0.214 4.214 20 C -0.219 4.219 21 H 0.052 0.948 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.023 0.977 25 H 0.024 0.976 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.627 2.462 15.441 15.720 hybrid contribution -0.765 -0.829 1.742 2.075 sum -2.393 1.632 17.183 17.425 Atomic orbital electron populations 1.21725 0.96509 1.00371 1.00424 1.21079 0.94989 1.00019 0.93538 0.91513 1.19244 0.95341 0.95401 0.92330 1.22066 1.38615 1.10217 0.92256 0.93171 1.25822 0.94711 0.97183 1.01381 1.70749 1.36010 1.15112 1.33509 0.83532 0.76281 0.74985 0.75336 1.21578 1.21492 1.21084 1.22192 1.00248 0.94303 0.89763 1.60598 1.19512 1.50438 1.01021 1.21001 0.94420 0.95891 0.88524 0.93918 1.21901 0.95396 1.02017 1.00599 1.22477 0.99633 1.05000 0.90016 1.23084 1.02512 0.93195 1.02567 1.22947 1.03392 0.96861 0.98677 0.94804 0.91751 0.94157 0.97727 0.97622 0.92175 0.96001 0.91622 0.84205 0.92570 0.91640 0.93019 0.87988 0.87950 0.89202 0.89045 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.77 37.16 0.33 -2.23 16 2 C -0.08 -1.63 2.55 -90.62 -0.23 -1.86 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.27 16 5 C -0.59 -17.04 8.41 -34.44 -0.29 -17.33 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.60 13.65 55.43 0.76 -27.84 16 9 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.06 1.14 4.94 -3.83 -0.02 1.12 16 14 N -0.68 -10.42 6.31 -106.73 -0.67 -11.09 16 15 C 0.11 1.45 3.01 -67.71 -0.20 1.24 16 16 H 0.04 0.58 7.80 -51.93 -0.41 0.18 16 17 C -0.14 -1.73 8.01 37.16 0.30 -1.43 16 18 C -0.15 -1.68 5.82 -90.62 -0.53 -2.20 16 19 C -0.18 -1.71 9.56 -26.76 -0.26 -1.97 16 20 C -0.18 -1.68 9.90 -26.76 -0.26 -1.94 16 21 H 0.03 0.54 6.68 -51.93 -0.35 0.20 16 22 H 0.06 1.34 6.95 -51.93 -0.36 0.98 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 25 H 0.01 0.15 8.00 -51.93 -0.42 -0.26 16 26 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 27 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 28 H 0.07 1.22 7.44 -51.93 -0.39 0.83 16 29 H 0.34 4.91 6.43 -39.29 -0.25 4.66 16 30 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 31 H 0.06 0.81 6.98 -51.93 -0.36 0.45 16 32 H 0.05 0.53 7.07 -51.93 -0.37 0.17 16 33 H 0.10 1.10 7.85 -51.93 -0.41 0.69 16 34 H 0.10 0.99 5.85 -51.93 -0.30 0.69 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.83 7.60 -51.93 -0.39 0.44 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -30.28 290.38 -8.37 -38.65 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.38 Total: 1.29 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -1.37 Total: -26.09 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.08 Total: -38.94 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.28 -8.37 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.253 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds