Wall clock time and date at job start Sun Mar 29 2020 21:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 H 1.09000 * 109.46982 * 324.99932 * 15 14 13 17 17 C 1.53008 * 109.47109 * 85.00215 * 15 14 13 18 18 C 1.52999 * 109.47155 * 204.99904 * 15 14 13 19 19 C 1.53000 * 117.49890 * 248.62389 * 18 15 14 20 20 C 1.52998 * 117.50151 * 180.02562 * 18 15 14 21 21 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 22 22 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 23 23 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 25 25 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 28 28 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 29 29 H 1.00901 * 111.00285 * 56.04255 * 14 13 2 30 30 H 1.08993 * 109.46747 * 299.99635 * 17 15 14 31 31 H 1.08994 * 109.46999 * 60.00076 * 17 15 14 32 32 H 1.08998 * 109.47057 * 179.97438 * 17 15 14 33 33 H 1.09000 * 115.54870 * 34.32389 * 18 15 14 34 34 H 1.08998 * 117.50112 * 359.97438 * 19 18 15 35 35 H 1.09000 * 117.50141 * 145.02236 * 19 18 15 36 36 H 1.08996 * 117.50294 * 214.97976 * 20 18 15 37 37 H 1.09000 * 117.49578 * 0.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 1 2.0824 -1.7076 3.5333 17 6 3.5694 -0.2052 3.9490 18 6 1.2372 -0.2226 4.8452 19 6 1.8589 0.6613 5.9283 20 6 1.5708 -0.8129 6.2168 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0275 0.0005 24 1 1.6053 -1.7198 -1.2952 25 1 3.1262 -0.7995 -1.2056 26 1 2.9362 -2.0177 -3.0611 27 1 1.6053 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 0.6529 0.1793 2.4753 30 1 4.2024 -0.4931 3.1097 31 1 3.6127 0.8757 4.0828 32 1 3.9212 -0.6975 4.8555 33 1 0.1854 -0.0634 4.6078 34 1 2.9011 0.9545 5.8018 35 1 1.2161 1.4022 6.4037 36 1 0.7384 -1.0422 6.8819 37 1 2.4235 -1.4888 6.2798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602504125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:39 Heat of formation + Delta-G solvation = -21.517750 kcal Electronic energy + Delta-G solvation = -14044.507828 eV Core-core repulsion = 11820.687734 eV Total energy + Delta-G solvation = -2223.820094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.75724 -37.92382 -35.56956 -33.78788 -30.33862 -28.37700 -27.26380 -25.28469 -23.80133 -23.11277 -21.07645 -20.26019 -18.87743 -17.49248 -16.47767 -16.11327 -15.72406 -15.57125 -15.37893 -14.59664 -14.07128 -14.01985 -13.48397 -13.39726 -13.02793 -12.82398 -12.67058 -12.50469 -12.14212 -11.94886 -11.85810 -11.81744 -11.62842 -11.37921 -11.15533 -10.95896 -10.55737 -10.52578 -9.37578 -8.66008 -6.34973 1.52339 1.61947 1.79432 2.57622 2.80271 3.18506 3.28503 3.73197 3.97396 4.08150 4.14770 4.16788 4.24426 4.31644 4.41082 4.62221 4.63160 4.70541 4.79759 4.87582 4.90421 4.94129 5.02269 5.10038 5.20006 5.23838 5.28689 5.30136 5.38740 5.47726 5.62817 6.01257 6.13098 6.21985 6.48348 6.61622 7.46259 8.74680 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.071683 B = 0.005147 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.514161 B = 5438.439462 C = 5584.435071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 H 0.055 0.945 4 C 0.016 3.984 5 C -0.605 4.605 6 H 0.053 0.947 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.119 2.881 10 H -0.272 1.272 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.078 3.922 14 N -0.683 5.683 15 C 0.110 3.890 16 H 0.036 0.964 17 C -0.139 4.139 18 C -0.168 4.168 19 C -0.174 4.174 20 C -0.170 4.170 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.040 0.960 24 H -0.014 1.014 25 H -0.018 1.018 26 H 0.253 0.747 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.345 0.655 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 2.992 18.407 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.021 4.021 5 C -0.643 4.643 6 H 0.071 0.929 7 C -0.239 4.239 8 N -0.580 5.580 9 Si 0.940 3.060 10 H -0.198 1.198 11 H -0.194 1.194 12 H -0.210 1.210 13 C -0.051 4.051 14 N -0.316 5.316 15 C 0.001 3.999 16 H 0.054 0.946 17 C -0.196 4.196 18 C -0.186 4.186 19 C -0.211 4.211 20 C -0.207 4.207 21 H 0.088 0.912 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.004 0.996 25 H 0.000 1.000 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.165 0.835 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.652 3.434 16.752 17.305 hybrid contribution -0.424 -1.145 1.418 1.871 sum -3.076 2.289 18.170 18.570 Atomic orbital electron populations 1.21634 0.94728 1.00651 1.01251 1.20907 0.96417 0.98801 0.92756 0.92665 1.19186 0.93783 0.94799 0.94362 1.22458 1.38096 1.10364 0.93369 0.92920 1.27424 0.93985 0.97284 1.05237 1.70890 1.37922 1.16412 1.32806 0.82911 0.76633 0.74681 0.71728 1.19760 1.19373 1.20966 1.21868 0.99426 0.94074 0.89760 1.60545 1.20023 1.50163 1.00874 1.21051 0.95240 0.95355 0.88271 0.94592 1.21889 0.94723 1.02145 1.00869 1.22394 0.99374 1.06938 0.89905 1.23156 1.02588 0.93774 1.01586 1.23033 1.03862 0.96618 0.97185 0.91245 0.93597 0.94127 0.99583 0.99994 0.93718 0.96085 0.92713 0.83529 0.94291 0.91707 0.90943 0.87708 0.88000 0.88173 0.87664 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 8.77 71.98 0.63 -4.06 16 2 C -0.07 -2.96 2.55 -10.79 -0.03 -2.98 16 3 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.02 0.87 3.76 29.85 0.11 0.98 16 5 C -0.60 -35.17 8.41 25.60 0.22 -34.96 16 6 H 0.05 2.98 7.06 -2.91 -0.02 2.96 16 7 C -0.04 -2.53 5.46 84.65 0.46 -2.07 16 8 N -0.94 -59.97 13.65 21.45 0.29 -59.68 16 9 Si 1.12 51.41 29.90 68.60 2.05 53.46 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.08 2.79 4.94 86.30 0.43 3.22 16 14 N -0.68 -19.98 6.31 -491.57 -3.10 -23.08 16 15 C 0.11 2.70 3.01 44.92 0.14 2.84 16 16 H 0.04 0.94 7.80 -2.39 -0.02 0.92 16 17 C -0.14 -3.22 8.01 71.98 0.58 -2.64 16 18 C -0.17 -3.29 5.82 -10.79 -0.06 -3.36 16 19 C -0.17 -2.92 9.56 30.58 0.29 -2.62 16 20 C -0.17 -2.66 9.90 30.58 0.30 -2.36 16 21 H 0.07 2.09 6.68 -2.39 -0.02 2.08 16 22 H 0.04 1.87 6.95 -2.39 -0.02 1.85 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 25 H -0.02 -1.05 8.00 -2.39 -0.02 -1.07 16 26 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 27 H 0.02 0.75 8.06 -2.39 -0.02 0.73 16 28 H 0.05 2.07 7.44 -2.39 -0.02 2.05 16 29 H 0.34 9.28 6.43 -89.69 -0.58 8.71 16 30 H 0.04 1.02 7.45 -2.39 -0.02 1.00 16 31 H 0.06 1.51 6.98 -2.39 -0.02 1.49 16 32 H 0.07 1.36 7.07 -2.39 -0.02 1.34 16 33 H 0.10 2.01 7.85 -2.39 -0.02 1.99 16 34 H 0.10 1.72 5.85 -2.39 -0.01 1.70 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.46 7.60 -2.39 -0.02 1.44 16 Total: -1.00 -65.26 290.38 2.86 -62.40 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.55 Total: 14.91 kcal Atomic # 6 Polarization: -51.08 SS G_CDS: 3.06 Total: -48.02 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -2.81 Total: -82.76 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -65.26 2.86 -62.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.886 kcal (2) G-P(sol) polarization free energy of solvation -65.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds