Wall clock time and date at job start Sun Mar 29 2020 21:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 5 5 C 1.50699 * 109.46678 * 294.99970 * 4 2 1 6 6 H 1.07994 * 120.00629 * 0.02562 * 5 4 2 7 7 C 1.37887 * 119.99470 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00112 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99747 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47487 * 59.99454 * 9 7 5 11 11 H 1.48506 * 109.47136 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47294 * 299.99637 * 9 7 5 13 13 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 14 14 N 1.46901 * 109.46769 * 65.00032 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.54265 * 110.03098 * 272.90937 * 15 14 13 17 17 C 1.54969 * 104.15836 * 217.13565 * 16 15 14 18 18 C 1.54886 * 102.77714 * 37.88849 * 17 16 15 19 19 C 1.53870 * 110.03246 * 155.69195 * 15 14 13 20 20 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 22 22 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 23 23 H 1.09004 * 109.46746 * 54.99828 * 4 2 1 24 24 H 1.08998 * 109.47205 * 174.99996 * 4 2 1 25 25 H 0.96996 * 120.00103 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.47398 * 185.00327 * 13 2 1 27 27 H 1.09001 * 109.47194 * 305.00507 * 13 2 1 28 28 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 29 29 H 1.08997 * 110.01568 * 34.30131 * 15 14 13 30 30 H 1.08994 * 110.48957 * 335.78150 * 16 15 14 31 31 H 1.09001 * 110.48935 * 98.43028 * 16 15 14 32 32 H 1.08996 * 110.72062 * 279.57236 * 17 16 15 33 33 H 1.09003 * 110.91933 * 156.29798 * 17 16 15 34 34 H 1.08997 * 110.48880 * 203.40135 * 18 17 16 35 35 H 1.09008 * 110.59894 * 80.81699 * 18 17 16 36 36 H 1.09002 * 110.03390 * 238.57300 * 19 15 14 37 37 H 1.08998 * 110.03390 * 359.95296 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6746 -1.5197 3.8513 9 14 1.4975 0.5622 5.2497 10 1 0.0176 0.6689 5.3086 11 1 1.9926 -0.1377 6.4623 12 1 2.0897 1.9227 5.1877 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1248 -0.6272 -3.6672 16 6 3.5621 -0.1718 -3.9934 17 6 3.5898 -0.0834 -5.5403 18 6 2.1854 0.4765 -5.8766 19 6 1.2497 -0.2157 -4.8641 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6053 -1.7198 1.2952 24 1 3.1262 -0.7995 1.2057 25 1 2.9212 -1.8430 4.7319 26 1 3.1263 -0.7996 -1.2055 27 1 1.6053 -1.7198 -1.2951 28 1 1.9882 0.9872 -2.3966 29 1 2.0961 -1.7092 -3.5383 30 1 3.7624 0.8045 -3.5521 31 1 4.2849 -0.9070 -3.6396 32 1 3.7276 -1.0709 -5.9806 33 1 4.3691 0.6003 -5.8772 34 1 1.9044 0.2144 -6.8967 35 1 2.1611 1.5579 -5.7412 36 1 0.7971 -1.0979 -5.3166 37 1 0.4733 0.4766 -4.5384 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602505904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:09 Heat of formation + Delta-G solvation = -36.908742 kcal Electronic energy + Delta-G solvation = -14077.106623 eV Core-core repulsion = 11852.619125 eV Total energy + Delta-G solvation = -2224.487498 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.60805 -35.92439 -33.16071 -31.58379 -28.68529 -27.44266 -26.48252 -24.55043 -22.28594 -20.78255 -20.05413 -18.83072 -16.38661 -15.80186 -15.55567 -14.56823 -14.34835 -13.89696 -13.49610 -13.34460 -12.65413 -12.26296 -12.07701 -11.44691 -11.26802 -11.23354 -11.12385 -11.08906 -10.81630 -10.74044 -10.71890 -10.50758 -10.26021 -10.16863 -9.65789 -9.09650 -8.91782 -8.29907 -7.99244 -5.94831 -3.95889 3.36330 3.40490 3.43183 4.41576 4.51823 4.62060 4.67696 4.96764 5.40509 5.40886 5.44421 5.51738 5.59943 5.65258 5.77081 5.82654 5.90447 5.95565 6.02505 6.18946 6.23055 6.26079 6.29239 6.48048 6.62651 6.73703 7.07286 7.22610 7.25267 7.48386 7.71271 7.76088 7.89517 8.05616 8.49878 9.10365 9.67243 11.16740 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067644 B = 0.005254 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.830417 B = 5328.187020 C = 5494.054296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.082 3.918 16 C -0.154 4.154 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.116 4.116 20 H 0.039 0.961 21 H 0.052 0.948 22 H 0.041 0.959 23 H 0.016 0.984 24 H 0.012 0.988 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.337 0.663 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 2.598 -16.635 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.312 5.312 15 C -0.029 4.029 16 C -0.193 4.193 17 C -0.160 4.160 18 C -0.163 4.163 19 C -0.154 4.154 20 H 0.058 0.942 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.155 0.845 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.683 2.188 -16.513 16.671 hybrid contribution 0.838 0.582 1.015 1.440 sum 0.155 2.770 -15.498 15.744 Atomic orbital electron populations 1.21580 0.95770 1.00527 1.00079 1.21202 0.95970 0.98877 0.94147 0.92929 1.19120 0.95871 0.95565 0.90472 1.21211 1.34593 1.08282 0.91021 0.92634 1.25020 0.95350 0.95093 0.99071 1.69955 1.39147 1.21203 1.23442 0.86691 0.78911 0.80088 0.82495 1.20260 1.21382 1.20335 1.22165 0.97136 0.97602 0.89606 1.60695 1.63584 1.05554 1.01346 1.22224 0.91376 0.98683 0.90588 1.23154 0.98537 1.01432 0.96223 1.22441 0.97080 1.00763 0.95762 1.22373 0.95144 1.00043 0.98769 1.22187 0.98202 1.00481 0.94555 0.94212 0.92849 0.93955 0.96596 0.96978 0.93069 0.95857 0.91728 0.84500 0.90640 0.91523 0.91830 0.91706 0.91987 0.92079 0.91828 0.92060 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.15 0.33 -2.11 16 2 C -0.08 -1.73 2.48 -90.62 -0.22 -1.96 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.57 8.41 -34.44 -0.29 -14.86 16 6 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.13 4.90 -3.82 -0.02 1.11 16 14 N -0.68 -10.13 5.62 -105.54 -0.59 -10.73 16 15 C 0.08 1.04 3.23 -66.59 -0.21 0.82 16 16 C -0.15 -1.77 6.43 -25.03 -0.16 -1.93 16 17 C -0.12 -1.18 6.91 -24.70 -0.17 -1.35 16 18 C -0.13 -1.19 6.83 -25.07 -0.17 -1.36 16 19 C -0.12 -1.28 6.60 -25.62 -0.17 -1.45 16 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 22 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 28 H 0.34 4.82 8.12 -39.29 -0.32 4.50 16 29 H 0.08 1.01 7.82 -51.93 -0.41 0.60 16 30 H 0.07 0.79 7.57 -51.93 -0.39 0.39 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.90 7.92 -51.93 -0.41 0.48 16 LS Contribution 293.44 15.07 4.42 4.42 Total: -1.00 -29.34 293.44 -8.63 -37.97 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.87 Total: -1.00 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -1.31 Total: -20.99 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.14 Total: -37.30 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.34 -8.63 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.064 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds