Wall clock time and date at job start Sun Mar 29 2020 21:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 5 5 C 1.50699 * 109.46678 * 294.99970 * 4 2 1 6 6 H 1.07994 * 120.00629 * 0.02562 * 5 4 2 7 7 C 1.37887 * 119.99470 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00112 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99747 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47487 * 59.99454 * 9 7 5 11 11 H 1.48506 * 109.47136 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47294 * 299.99637 * 9 7 5 13 13 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 14 14 N 1.46901 * 109.46769 * 65.00032 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.54265 * 110.03098 * 272.90937 * 15 14 13 17 17 C 1.54969 * 104.15836 * 217.13565 * 16 15 14 18 18 C 1.54886 * 102.77714 * 37.88849 * 17 16 15 19 19 C 1.53870 * 110.03246 * 155.69195 * 15 14 13 20 20 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 22 22 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 23 23 H 1.09004 * 109.46746 * 54.99828 * 4 2 1 24 24 H 1.08998 * 109.47205 * 174.99996 * 4 2 1 25 25 H 0.96996 * 120.00103 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.47398 * 185.00327 * 13 2 1 27 27 H 1.09001 * 109.47194 * 305.00507 * 13 2 1 28 28 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 29 29 H 1.08997 * 110.01568 * 34.30131 * 15 14 13 30 30 H 1.08994 * 110.48957 * 335.78150 * 16 15 14 31 31 H 1.09001 * 110.48935 * 98.43028 * 16 15 14 32 32 H 1.08996 * 110.72062 * 279.57236 * 17 16 15 33 33 H 1.09003 * 110.91933 * 156.29798 * 17 16 15 34 34 H 1.08997 * 110.48880 * 203.40135 * 18 17 16 35 35 H 1.09008 * 110.59894 * 80.81699 * 18 17 16 36 36 H 1.09002 * 110.03390 * 238.57300 * 19 15 14 37 37 H 1.08998 * 110.03390 * 359.95296 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6746 -1.5197 3.8513 9 14 1.4975 0.5622 5.2497 10 1 0.0176 0.6689 5.3086 11 1 1.9926 -0.1377 6.4623 12 1 2.0897 1.9227 5.1877 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1248 -0.6272 -3.6672 16 6 3.5621 -0.1718 -3.9934 17 6 3.5898 -0.0834 -5.5403 18 6 2.1854 0.4765 -5.8766 19 6 1.2497 -0.2157 -4.8641 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6053 -1.7198 1.2952 24 1 3.1262 -0.7995 1.2057 25 1 2.9212 -1.8430 4.7319 26 1 3.1263 -0.7996 -1.2055 27 1 1.6053 -1.7198 -1.2951 28 1 1.9882 0.9872 -2.3966 29 1 2.0961 -1.7092 -3.5383 30 1 3.7624 0.8045 -3.5521 31 1 4.2849 -0.9070 -3.6396 32 1 3.7276 -1.0709 -5.9806 33 1 4.3691 0.6003 -5.8772 34 1 1.9044 0.2144 -6.8967 35 1 2.1611 1.5579 -5.7412 36 1 0.7971 -1.0979 -5.3166 37 1 0.4733 0.4766 -4.5384 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602505904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:09 Heat of formation + Delta-G solvation = -53.888807 kcal Electronic energy + Delta-G solvation = -14077.842934 eV Core-core repulsion = 11852.619125 eV Total energy + Delta-G solvation = -2225.223809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65035 -37.48429 -34.95122 -33.28775 -29.54623 -29.11118 -27.98924 -26.16290 -24.11512 -21.65045 -21.21013 -20.33542 -18.50205 -16.90616 -16.65899 -16.43662 -15.83914 -15.32606 -14.79152 -14.26759 -14.18289 -14.11127 -13.53458 -13.17900 -12.88974 -12.76098 -12.45546 -12.35699 -12.19722 -11.97727 -11.90435 -11.83647 -11.61159 -11.49232 -11.34512 -11.09153 -10.85171 -10.52946 -9.22982 -8.17214 -6.26684 1.40372 1.43362 1.51053 2.42456 3.16046 3.28491 3.73894 3.79839 4.07483 4.15519 4.35010 4.53230 4.54426 4.56775 4.67341 4.72686 4.84685 4.89676 4.93985 4.98880 5.03189 5.11560 5.21537 5.27293 5.31823 5.39974 5.46281 5.49707 5.50755 5.57540 5.81194 5.88548 6.17986 6.32774 6.55327 6.89090 7.41614 8.94795 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067644 B = 0.005254 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.830417 B = 5328.187020 C = 5494.054296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.078 3.922 14 N -0.679 5.679 15 C 0.078 3.922 16 C -0.154 4.154 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.112 4.112 20 H 0.033 0.967 21 H 0.037 0.963 22 H 0.067 0.933 23 H -0.011 1.011 24 H -0.015 1.015 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.057 0.943 28 H 0.342 0.658 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 3.840 -17.685 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.051 4.051 14 N -0.309 5.309 15 C -0.033 4.033 16 C -0.194 4.194 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.151 4.151 20 H 0.052 0.948 21 H 0.057 0.943 22 H 0.086 0.914 23 H 0.007 0.993 24 H 0.003 0.997 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.269 3.442 -17.587 17.965 hybrid contribution 1.038 0.162 1.308 1.678 sum -0.230 3.604 -16.278 16.674 Atomic orbital electron populations 1.21476 0.94674 1.00303 1.00511 1.21023 0.96735 0.98389 0.93212 0.92827 1.19016 0.94019 0.94674 0.92839 1.21616 1.34525 1.08633 0.92077 0.92061 1.25965 0.95212 0.96090 1.02682 1.70096 1.40321 1.22937 1.24348 0.85548 0.78955 0.78759 0.78079 1.19199 1.20988 1.19209 1.21845 0.96385 0.97171 0.89705 1.60653 1.63705 1.05634 1.00912 1.22328 0.92700 0.98067 0.90159 1.23117 0.97384 1.00907 0.97963 1.22434 0.97651 1.01516 0.93959 1.22356 0.94365 1.00002 0.99082 1.22147 0.98016 1.00811 0.94077 0.94757 0.94344 0.91424 0.99302 0.99678 0.92934 0.96647 0.92413 0.83928 0.91538 0.91838 0.92584 0.91070 0.90887 0.90474 0.91557 0.91348 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 2 C -0.07 -3.13 2.48 -10.79 -0.03 -3.16 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -30.49 8.41 25.60 0.22 -30.27 16 6 H 0.06 3.38 7.05 -2.91 -0.02 3.36 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 8 N -0.94 -58.03 13.29 21.45 0.28 -57.74 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 C 0.08 2.78 4.90 86.30 0.42 3.20 16 14 N -0.68 -19.42 5.62 -487.83 -2.74 -22.16 16 15 C 0.08 1.87 3.23 45.64 0.15 2.02 16 16 C -0.15 -3.35 6.43 31.70 0.20 -3.15 16 17 C -0.12 -1.98 6.91 31.91 0.22 -1.76 16 18 C -0.12 -1.95 6.83 31.67 0.22 -1.73 16 19 C -0.11 -2.24 6.60 31.32 0.21 -2.03 16 20 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.04 1.59 6.95 -2.38 -0.02 1.58 16 22 H 0.07 2.30 7.75 -2.39 -0.02 2.28 16 23 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 24 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 25 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.02 0.57 8.12 -2.39 -0.02 0.55 16 27 H 0.06 2.13 8.07 -2.39 -0.02 2.11 16 28 H 0.34 9.29 8.12 -89.70 -0.73 8.56 16 29 H 0.07 1.73 7.82 -2.39 -0.02 1.71 16 30 H 0.06 1.42 7.57 -2.39 -0.02 1.40 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.49 7.92 -2.39 -0.02 1.47 16 Total: -1.00 -62.70 293.44 2.69 -60.02 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.28 Total: 11.41 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 2.84 Total: -38.46 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -2.46 Total: -79.90 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -62.70 2.69 -60.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.127 kcal (2) G-P(sol) polarization free energy of solvation -62.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds