Wall clock time and date at job start Sun Mar 29 2020 21:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47364 * 2 1 4 4 C 1.53007 * 109.47099 * 240.00516 * 2 1 3 5 5 C 1.50695 * 109.47255 * 64.99651 * 4 2 1 6 6 H 1.08005 * 119.99788 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00285 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99812 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00198 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46897 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46961 * 119.99884 * 9 7 5 12 12 H 1.48492 * 109.46763 * 240.00005 * 9 7 5 13 13 C 1.53000 * 109.47356 * 120.00793 * 2 1 3 14 14 N 1.46898 * 109.46655 * 294.99619 * 13 2 1 15 15 C 1.46904 * 111.00107 * 179.97438 * 14 13 2 16 16 C 1.55238 * 110.46809 * 269.81105 * 15 14 13 17 17 C 1.54894 * 102.58338 * 203.38989 * 16 15 14 18 18 C 1.54266 * 104.31305 * 37.93170 * 17 16 15 19 19 C 1.53869 * 106.60031 * 336.32486 * 18 17 16 20 20 H 1.09001 * 109.46374 * 299.99616 * 1 2 3 21 21 H 1.09003 * 109.46774 * 59.99313 * 1 2 3 22 22 H 1.08991 * 109.47185 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47616 * 185.00250 * 4 2 1 24 24 H 1.09007 * 109.46952 * 305.00065 * 4 2 1 25 25 H 0.96996 * 119.99963 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.47337 * 174.99509 * 13 2 1 27 27 H 1.09003 * 109.47013 * 54.99371 * 13 2 1 28 28 H 1.00900 * 111.00450 * 56.04737 * 14 13 2 29 29 H 1.09007 * 110.42882 * 32.46126 * 15 14 13 30 30 H 1.08996 * 110.89448 * 85.10553 * 16 15 14 31 31 H 1.08993 * 110.76342 * 321.62219 * 16 15 14 32 32 H 1.09002 * 110.48891 * 279.18596 * 17 16 15 33 33 H 1.08998 * 110.48494 * 156.67683 * 17 16 15 34 34 H 1.09001 * 110.03084 * 95.60669 * 18 17 16 35 35 H 1.08996 * 110.03108 * 216.98559 * 18 17 16 36 36 H 1.08999 * 110.04012 * 119.28327 * 19 18 17 37 37 H 1.09006 * 110.02998 * 240.67078 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6746 -1.5196 -3.8514 9 14 1.4986 0.5632 -5.2497 10 1 0.7421 1.7747 -4.8433 11 1 2.7169 0.9671 -5.9966 12 1 0.6439 -0.2853 -6.1184 13 6 2.0401 -0.7214 1.2491 14 7 1.6515 0.0372 2.4455 15 6 2.1249 -0.6274 3.6671 16 6 1.0548 -1.6210 4.1940 17 6 1.4138 -1.7384 5.6962 18 6 1.8357 -0.3106 6.1001 19 6 2.2877 0.3958 4.8100 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1263 -0.7995 -1.2058 24 1 1.6053 -1.7198 -1.2953 25 1 2.9219 -1.8424 -4.7320 26 1 3.1263 -0.7997 1.2054 27 1 1.6054 -1.7200 1.2950 28 1 0.6530 0.1791 2.4753 29 1 3.0669 -1.1427 3.4793 30 1 1.1447 -2.5878 3.6987 31 1 0.0524 -1.2124 4.0671 32 1 2.2403 -2.4348 5.8377 33 1 0.5450 -2.0568 6.2723 34 1 0.9897 0.2187 6.5388 35 1 2.6597 -0.3522 6.8124 36 1 1.6613 1.2678 4.6225 37 1 3.3316 0.6977 4.8958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602505907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:10 Heat of formation + Delta-G solvation = -37.701165 kcal Electronic energy + Delta-G solvation = -14066.909016 eV Core-core repulsion = 11842.387156 eV Total energy + Delta-G solvation = -2224.521860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.56890 -36.02238 -33.18361 -31.58208 -28.69441 -27.46419 -26.56324 -24.69930 -22.24070 -20.68941 -20.05178 -18.82952 -16.45593 -15.83541 -15.64164 -14.72706 -14.36066 -13.67639 -13.46065 -13.33718 -12.72873 -12.38967 -12.00830 -11.66734 -11.48628 -11.30783 -11.11858 -11.07960 -10.86647 -10.76080 -10.67780 -10.43967 -10.28415 -10.12218 -9.68638 -9.11169 -8.91396 -8.30862 -8.00553 -5.95406 -3.96353 3.33748 3.41242 3.45507 4.36644 4.50910 4.62898 4.69124 4.97789 5.36336 5.40476 5.42123 5.49779 5.58798 5.67014 5.77871 5.81924 5.88325 5.92972 6.01128 6.08207 6.17069 6.22541 6.30942 6.35484 6.51846 6.60284 7.01298 7.14247 7.21333 7.47775 7.72273 7.75171 7.89683 8.05297 8.49403 9.10355 9.67017 11.16226 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.075928 B = 0.005116 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.684042 B = 5471.474624 C = 5546.640250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.082 3.918 16 C -0.155 4.155 17 C -0.122 4.122 18 C -0.125 4.125 19 C -0.115 4.115 20 H 0.031 0.969 21 H 0.062 0.938 22 H 0.040 0.960 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.259 0.741 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.338 0.662 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 0.714 16.758 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.029 4.029 16 C -0.194 4.194 17 C -0.160 4.160 18 C -0.163 4.163 19 C -0.153 4.153 20 H 0.050 0.950 21 H 0.081 0.919 22 H 0.059 0.941 23 H 0.033 0.967 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.158 0.842 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.053 1.043 16.574 16.733 hybrid contribution -0.820 -0.400 -0.891 1.275 sum -2.873 0.643 15.684 15.957 Atomic orbital electron populations 1.21736 0.96739 1.00385 1.00220 1.21229 0.94837 1.00085 0.94245 0.91692 1.19118 0.96128 0.95366 0.90417 1.21288 1.34487 1.08221 0.90993 0.92512 1.25025 0.95361 0.95093 0.99100 1.69979 1.39250 1.21268 1.23230 0.86576 0.78251 0.80133 0.83295 1.19742 1.21085 1.21139 1.22153 1.00130 0.94521 0.89610 1.60635 1.19582 1.49965 1.01316 1.22525 0.97486 0.92753 0.90113 1.23286 0.99635 1.00422 0.96106 1.22267 1.00715 0.96987 0.96022 1.22139 1.00586 0.95839 0.97730 1.22130 1.01458 0.98576 0.93127 0.94998 0.91904 0.94065 0.96679 0.96776 0.93180 0.91625 0.95889 0.84238 0.90307 0.91713 0.91464 0.91785 0.92067 0.92111 0.92128 0.91154 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.78 37.16 0.33 -2.21 16 2 C -0.09 -1.78 2.55 -90.62 -0.23 -2.01 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.15 5.01 -3.83 -0.02 1.13 16 14 N -0.68 -10.39 6.29 -104.77 -0.66 -11.05 16 15 C 0.08 1.06 3.19 -65.86 -0.21 0.84 16 16 C -0.16 -1.77 6.49 -24.55 -0.16 -1.93 16 17 C -0.12 -1.17 6.82 -25.07 -0.17 -1.34 16 18 C -0.12 -1.18 6.80 -25.62 -0.17 -1.35 16 19 C -0.11 -1.29 6.54 -25.62 -0.17 -1.46 16 20 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 21 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.34 4.90 6.48 -39.29 -0.25 4.64 16 29 H 0.08 1.06 7.82 -51.93 -0.41 0.66 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.76 7.80 -51.93 -0.40 0.36 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.82 8.04 -51.93 -0.42 0.41 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 291.69 15.07 4.40 4.40 Total: -1.00 -29.37 291.69 -8.63 -38.00 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.77 Total: -0.64 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.32 Total: -21.04 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.08 Total: -37.57 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.37 -8.63 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.296 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds