Wall clock time and date at job start Sun Mar 29 2020 21:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47364 * 2 1 4 4 C 1.53007 * 109.47099 * 240.00516 * 2 1 3 5 5 C 1.50695 * 109.47255 * 64.99651 * 4 2 1 6 6 H 1.08005 * 119.99788 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00285 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99812 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00198 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46897 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46961 * 119.99884 * 9 7 5 12 12 H 1.48492 * 109.46763 * 240.00005 * 9 7 5 13 13 C 1.53000 * 109.47356 * 120.00793 * 2 1 3 14 14 N 1.46898 * 109.46655 * 294.99619 * 13 2 1 15 15 C 1.46904 * 111.00107 * 179.97438 * 14 13 2 16 16 C 1.55238 * 110.46809 * 269.81105 * 15 14 13 17 17 C 1.54894 * 102.58338 * 203.38989 * 16 15 14 18 18 C 1.54266 * 104.31305 * 37.93170 * 17 16 15 19 19 C 1.53869 * 106.60031 * 336.32486 * 18 17 16 20 20 H 1.09001 * 109.46374 * 299.99616 * 1 2 3 21 21 H 1.09003 * 109.46774 * 59.99313 * 1 2 3 22 22 H 1.08991 * 109.47185 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47616 * 185.00250 * 4 2 1 24 24 H 1.09007 * 109.46952 * 305.00065 * 4 2 1 25 25 H 0.96996 * 119.99963 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.47337 * 174.99509 * 13 2 1 27 27 H 1.09003 * 109.47013 * 54.99371 * 13 2 1 28 28 H 1.00900 * 111.00450 * 56.04737 * 14 13 2 29 29 H 1.09007 * 110.42882 * 32.46126 * 15 14 13 30 30 H 1.08996 * 110.89448 * 85.10553 * 16 15 14 31 31 H 1.08993 * 110.76342 * 321.62219 * 16 15 14 32 32 H 1.09002 * 110.48891 * 279.18596 * 17 16 15 33 33 H 1.08998 * 110.48494 * 156.67683 * 17 16 15 34 34 H 1.09001 * 110.03084 * 95.60669 * 18 17 16 35 35 H 1.08996 * 110.03108 * 216.98559 * 18 17 16 36 36 H 1.08999 * 110.04012 * 119.28327 * 19 18 17 37 37 H 1.09006 * 110.02998 * 240.67078 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6746 -1.5196 -3.8514 9 14 1.4986 0.5632 -5.2497 10 1 0.7421 1.7747 -4.8433 11 1 2.7169 0.9671 -5.9966 12 1 0.6439 -0.2853 -6.1184 13 6 2.0401 -0.7214 1.2491 14 7 1.6515 0.0372 2.4455 15 6 2.1249 -0.6274 3.6671 16 6 1.0548 -1.6210 4.1940 17 6 1.4138 -1.7384 5.6962 18 6 1.8357 -0.3106 6.1001 19 6 2.2877 0.3958 4.8100 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1263 -0.7995 -1.2058 24 1 1.6053 -1.7198 -1.2953 25 1 2.9219 -1.8424 -4.7320 26 1 3.1263 -0.7997 1.2054 27 1 1.6054 -1.7200 1.2950 28 1 0.6530 0.1791 2.4753 29 1 3.0669 -1.1427 3.4793 30 1 1.1447 -2.5878 3.6987 31 1 0.0524 -1.2124 4.0671 32 1 2.2403 -2.4348 5.8377 33 1 0.5450 -2.0568 6.2723 34 1 0.9897 0.2187 6.5388 35 1 2.6597 -0.3522 6.8124 36 1 1.6613 1.2678 4.6225 37 1 3.3316 0.6977 4.8958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602505907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:10 Heat of formation + Delta-G solvation = -54.951647 kcal Electronic energy + Delta-G solvation = -14067.657053 eV Core-core repulsion = 11842.387156 eV Total energy + Delta-G solvation = -2225.269897 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.62435 -37.54436 -34.98837 -33.28159 -29.55531 -29.13318 -28.03080 -26.29016 -24.08041 -21.60008 -21.08985 -20.41475 -18.54203 -16.91789 -16.82722 -16.48665 -15.90272 -15.07766 -14.72019 -14.49344 -14.24406 -13.89147 -13.66223 -13.30507 -12.85801 -12.72176 -12.70247 -12.32389 -12.23829 -12.02522 -11.95388 -11.82998 -11.62305 -11.47678 -11.23912 -11.06926 -10.87011 -10.54084 -9.23666 -8.17531 -6.26792 1.40275 1.40657 1.53932 2.42334 3.15966 3.24657 3.76109 3.79643 4.06388 4.21008 4.27303 4.43086 4.53650 4.56009 4.63577 4.73240 4.75626 4.87413 4.87873 4.97023 5.03302 5.13015 5.19382 5.23560 5.28108 5.36669 5.40300 5.48041 5.51543 5.56705 5.80652 5.89298 6.17634 6.32498 6.55779 6.89385 7.41647 8.94900 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.075928 B = 0.005116 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.684042 B = 5471.474624 C = 5546.640250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.079 3.921 14 N -0.685 5.685 15 C 0.076 3.924 16 C -0.153 4.153 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.112 4.112 20 H 0.066 0.934 21 H 0.045 0.955 22 H 0.040 0.960 23 H -0.015 1.015 24 H -0.010 1.010 25 H 0.262 0.738 26 H 0.053 0.947 27 H 0.022 0.978 28 H 0.344 0.656 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 1.624 17.858 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.096 4.096 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.051 4.051 14 N -0.316 5.316 15 C -0.034 4.034 16 C -0.193 4.193 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.150 4.150 20 H 0.085 0.915 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.004 0.996 24 H 0.008 0.992 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.165 0.835 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.117 1.960 17.698 18.077 hybrid contribution -0.458 -0.704 -1.201 1.466 sum -3.575 1.256 16.497 16.926 Atomic orbital electron populations 1.21638 0.94899 1.00646 1.01093 1.21034 0.96307 0.98949 0.93274 0.92594 1.19013 0.94157 0.94603 0.92773 1.21675 1.34405 1.08518 0.92055 0.92059 1.25965 0.95238 0.96096 1.02689 1.70112 1.40407 1.22988 1.24226 0.85436 0.78075 0.78888 0.78896 1.18529 1.20554 1.20467 1.21835 0.99212 0.94318 0.89698 1.60579 1.20073 1.49815 1.01112 1.22626 0.97527 0.93702 0.89587 1.23242 0.99165 0.99449 0.97406 1.22265 1.01435 0.97299 0.94630 1.22118 1.01392 0.95408 0.96861 1.22101 1.01504 0.98083 0.93320 0.91524 0.93557 0.94093 0.99630 0.99209 0.92942 0.92857 0.96012 0.83550 0.91332 0.92507 0.91113 0.91475 0.90701 0.91104 0.90955 0.91478 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.78 71.98 0.63 -4.01 16 2 C -0.08 -3.22 2.55 -10.79 -0.03 -3.25 16 3 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -30.37 8.41 25.60 0.22 -30.16 16 6 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 8 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 9 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.08 2.82 5.01 86.30 0.43 3.25 16 14 N -0.68 -20.03 6.29 -485.40 -3.05 -23.08 16 15 C 0.08 1.86 3.19 46.11 0.15 2.01 16 16 C -0.15 -3.23 6.49 32.01 0.21 -3.03 16 17 C -0.12 -1.98 6.82 31.67 0.22 -1.76 16 18 C -0.12 -1.93 6.80 31.32 0.21 -1.72 16 19 C -0.11 -2.31 6.54 31.32 0.20 -2.10 16 20 H 0.07 1.99 6.68 -2.39 -0.02 1.97 16 21 H 0.05 1.85 6.95 -2.39 -0.02 1.84 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 23 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 24 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.34 9.28 6.48 -89.69 -0.58 8.70 16 29 H 0.07 1.82 7.82 -2.38 -0.02 1.80 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.45 7.80 -2.39 -0.02 1.43 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.43 8.04 -2.39 -0.02 1.42 16 37 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -63.12 291.69 2.52 -60.61 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.43 Total: 11.80 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 2.83 Total: -38.62 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.77 Total: -80.77 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.12 2.52 -60.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.654 kcal (2) G-P(sol) polarization free energy of solvation -63.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds